• Stars
    star
    1
  • Language
  • Created almost 10 years ago
  • Updated almost 10 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Organizing things for UC Davis workshops, generally speaking.

More Repositories

1

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
HTML
105
star
2

2017-ucsc-metagenomics

Workshop materials for shotgun metagenomics
Jupyter Notebook
36
star
3

2017-cicese-metagenomics

Jupyter Notebook
18
star
4

2015-nov-adv-rna

Python
18
star
5

2023-snakemake-book-draft

A DRAFT, early stage book on snakemake.
Python
17
star
6

2017-dsi-docker-may

16
star
7

2016-bids-docker

Shell
15
star
8

2015-nov-docker

Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html
14
star
9

2018-cicese-metatranscriptomics

repo for cicese metatranscriptomics workshop, nov 2018
R
14
star
10

2021-GGG298

Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
Python
12
star
11

ngs-scripts

scripts!
Python
11
star
12

2016-adv-begin-shell-genomics

Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html
10
star
13

2020-GGG298

Python
10
star
14

2013-davis-assembly

Python
8
star
15

2016-metagenomics-sio

Metagenomics workshop at Scripps Institute of Oceanography
HTML
8
star
16

2020-GGG201b-lab

Materials from Intro to Bioinformatics lab, Winter offering at UC Davis (Jan-Mar 2020)
7
star
17

2018-ggg201b

Class resources for Intro to Genetics and Genomics 201b at UC Davis, 2018 version
Jupyter Notebook
7
star
18

2015-python-intro

6
star
19

ggg-shell-genomics-ws

Data for the first few shell genomics workshop lessons from Data Carpentry
Shell
5
star
20

2020-ggg-201b-variant-calling

Python
4
star
21

2017-dibsi-metagenomics

2017 DIBSI Metagenomics Workshop
Jupyter Notebook
4
star
22

2018-ggg-rstudio-bioinformatics-ws

R
4
star
23

2020-ggg-201b-rnaseq

HTML
4
star
24

2022-GGG298

Winter 2022 - Tools for Data Intensive Research at UC Davis.
Python
4
star
25

2023-june-datalab-collaboratory

Workshop schedule & ancillary information for June 2023 DataLab Collaboratory
4
star
26

2021-GGG201b-lab

Winter 2021, GGG 201(b) lab course - UC Davis.
Python
4
star
27

2021-august-remote-computing

Remote computing workshops in August 2021
Shell
4
star
28

2023-GGG298

Class materials for GGG 298, Tools for Data Intensive Research, WQ 2023 UC Davis.
3
star
29

2017-dibsi-rnaseq

Jupyter Notebook
3
star
30

dibsi-online

Materials for running the Data Intensive Biology Summer Institute online, in 2020. Because #coronavirus!!
3
star
31

2017-mbl-stamps

3
star
32

2015-may-nonmodel

Workshop materials for dib-training.readthedocs.org/en/pub/2015-05-04-mRNAseq-nonmodel.html
HTML
2
star
33

remote-computing-base

An Introduction to Remote Computing - base materials.
Shell
2
star
34

2015-oct-nonmodel

Workshop materials for http://dib-training.readthedocs.org/en/pub/2015-10-26-mRNA-denovo.html
HTML
2
star
35

2022-GGG201b-lab

GGG 201(b), Intro to Bioinformatics - lab section. Winter 2022 at UC Davis.
Jupyter Notebook
2
star
36

2015-nov-jupyter

Shell
2
star
37

2016-adv-begin-python

See https://dib-training.readthedocs.org/en/pub/2016-04-04-adv-beg-python.html
2
star
38

2024-GGG298

Class materials for GGG 298, Tools for Data Intensive Research, WQ 2024 @ UC Davis.
R
2
star
39

shared-conda-on-farm

Scripts and config for setting up a shared conda package space on farm.cse.ucdavis.edu
Shell
1
star
40

2019-ggg201b

Intro to Genetics and Genomics at UC Davis, 2019 version
1
star
41

snakemake-vidlets

repository to build, host, discuss, and improve snakemake video lessons
1
star
42

sqer-demo

Python
1
star
43

2017-davis-ggg201a-day2

These lessons are adapted from Data Carpentry: R for data analysis and visualization of Ecological Data
R
1
star
44

2021-ggg-201b-lab-hw1

Python
1
star
45

2014-msu-rnaseq

HTML
1
star
46

2013-norwich-bioinfo

2013 advanced bioinformatics workshop at Norwich
Python
1
star
47

2015-sep-microbial

HTML
1
star
48

2019-ggg-201a-rnaseq-oneday

A short ~1 hour RNAseq introduction, using yeast data and salmon.
R
1
star
49

2016-aug-nonmodel-rnaseq

HTML
1
star
50

2021-remote-computing-snakemake

Python
1
star
51

2016-feb-aws

Python
1
star
52

2023-ggg298-sourmash-compare

A simple example snakemake workflow
Jupyter Notebook
1
star
53

2017-cloud-workflows-misc

1
star
54

2018-ggg-rstudio-bioinformatics-ws-materials

1
star
55

2024-ggg-201b-variant-calling

Python
1
star
56

2024-ggg-201b-lab

1
star
57

2023-rnaseq

1
star
58

2024-ggg-201b-rnaseq

RNAseq stuff for 201b
HTML
1
star
59

2024-pig-paradigm-workshop

Shell
1
star