Nextclade
Viral genome clade assignment, mutation calling, and sequence quality checks
by Nextstrain team
๐๏ธ Citation
If you use results obtained with Nextclade in a publication, please
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cite our paper:
Aksamentov, I., Roemer, C., Hodcroft, E. B., & Neher, R. A., (2021). Nextclade: clade assignment, mutation calling and quality control for viral genomes. Journal of Open Source Software, 6(67), 3773, https://doi.org/10.21105/joss.03773
(bibtex)
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where possible, provide a link to Nextclade Web:
๐ Documentation
- Documentation for Nextclade: https://docs.nextstrain.org/projects/nextclade
- Documentation for the parent project, Nextstrain: https://docs.nextstrain.org
๐งโ๐ป Development
Read developer guide here: docs/dev/developer-guide.md
โจ Team
Nextclade is a part of Nextstrain project .
It is maintained by:
Senior Software Engineer |
Principal Investigator |
Staff Scientist |
We are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (emoji key):
This project follows the all-contributors specification. Contributions of any kind welcome!
๐ข Sponsors
We are thankful to the following companies who supported us:
Vercel for sponsoring Nextclade builds on their platform |