nextflow-io/summit

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Rank 3,937,279 (Top 79 %)
Language Nextflow
License
Apache License 2.0
Created 4 months ago
Updated 4 months ago

nextflow-io/summit

nextflow-io

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nextflow

A DSL for data-driven computational pipelines

awesome-nextflow

A curated list of nextflow based pipelines

patterns

A curated collection of Nextflow implementation patterns

training

Nextflow training material

rnaseq-nf

A proof of concept of RNAseq pipeline

nf-validation

Params validation plugin for Nextflow pipelines

rnatoy

A proof of concept RNA-Seq pipeline with Nextflow

nf-hack17-tutorial

Nextflow basic tutorial for newbie users

nfcamp-tutorial

A tutorial for DLS-2 migration

cwl2nxf

Import a CWL workflow specification to Nextflow script (experimental)

nf-sqldb

SQL support plugin for Nextflow

vscode-language-nextflow

Nextflow language support for Visual Studio Editor

nf-prov

crg-course-nov16

Nextflow + Docker tutorial material

hyperopt

Nextflow pipeline for hyperparameter optimization of machine learning models

nf-hack18

Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/

hello

Classic hello world script in Nextflow language

nf-gpt

Experimental plugin to integrate GPT like prompt into Nextflow

nf-hack17

Nextflow hackathon 2017 projects

blast-example

A basic blast pipeline using nextflow

rmghc-2018

Nextflow Workshop at Rocky Mountain Genomics HackCon 2018

nf-co2footprint

[WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.

nf-hello

Nextflow plugin implementation skeleton

atom-language-nextflow

Nextflow syntax highlighter for Atom editor

nf-ffq

Nextflow plugin to fetch fastq samples via ffq

k8s-fuse-plugin

Kubernetes device plugin for using /dev/fuse without privileged flag

website

Nextflow public web site

gccbosc18-training

Documentation for Nextflow training at GCC/BOSC 2018

nf-weblog

Implement weblog plugin for Nextflow

socks

nextflow run socks

tests

vscode-dag-preview

Experimental VSCode plugin rendering Nextflow execution DAG

nf-sraql

Tentative Nextflow plugin for AWS Athena and Google Bigquery

nf-quilt

Quilt plugin for Nextflow

elixir-workshop-21

Nextflow workflow workshop 2021

trademark

Nextflow logo & trademark policy

faq

Nextflow frequently asked questions

nf-recursion

Showcase repository for Nextflow recursion

nf-azure

Azure cloud plugin for Nextflow

nxf-tes-java-client

Experimental TES API client

nf-tweet

Proof of concept plugin showing how to implement Nextflow plugin interacting with a foreign API

summit-website

nf-nomad

Hashicorp Nomad executor plugin for Nextflow

nf-parquet

Plugin implementing the support for Apache Parquet files (experimental)

nf-ga4gh

GA4GH plugin for Nextflow

nf-tower

Nextflow plugin providing the support for Tower

nf-kafka

nextflow plugin for events subsystems

.github

nf-amazon

Amazon Web Services plugin for Nextflow

nxf-httpfs

nf-wr

WR extension module for Nextflow

flowata

nf-wave

Wave provisioning containers plugin for Nextflow

nf-legacy-cloud

Legacy cloud support for Nextflow pipeline system

nf-ignite

gpt-prompt-engineer

Exploring workflow for prompt engineer with Nextflow