Discover nextflow-io/faq Open Source project by @nextflow-io

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nextflow-io

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Nextflow frequently asked questions

nextflow

A DSL for data-driven computational pipelines

Groovy

2,721

awesome-nextflow

A curated list of nextflow based pipelines

566

patterns

A curated collection of Nextflow implementation patterns

Nextflow

327

training

Nextflow training material

Nextflow

126

rnaseq-nf

A proof of concept of RNAseq pipeline

Nextflow

rnatoy

A proof of concept RNA-Seq pipeline with Nextflow

Nextflow

nf-hack17-tutorial

Nextflow basic tutorial for newbie users

Nextflow

nfcamp-tutorial

A tutorial for DLS-2 migration

Nextflow

cwl2nxf

Import a CWL workflow specification to Nextflow script (experimental)

Groovy

nf-sqldb

SQL support plugin for Nextflow

Groovy

vscode-language-nextflow

Nextflow language support for Visual Studio Editor

nf-prov

Groovy

crg-course-nov16

Nextflow + Docker tutorial material

hyperopt

Nextflow pipeline for hyperparameter optimization of machine learning models

Python

nf-hack18

Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/

Nextflow

hello

Classic hello world script in Nextflow language

Nextflow

nf-gpt

Experimental plugin to integrate GPT like prompt into Nextflow

Groovy

nf-schema

Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines

Groovy

nf-co2footprint

[WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.

Groovy

nf-hack17

Nextflow hackathon 2017 projects

Shell

blast-example

A basic blast pipeline using nextflow

Nextflow

rmghc-2018

Nextflow Workshop at Rocky Mountain Genomics HackCon 2018

HTML

nf-hello

Nextflow plugin implementation skeleton

Groovy

atom-language-nextflow

Nextflow syntax highlighter for Atom editor

nf-ffq

Nextflow plugin to fetch fastq samples via ffq

Groovy

k8s-fuse-plugin

Kubernetes device plugin for using /dev/fuse without privileged flag

nf-weblog

Implement weblog plugin for Nextflow

Groovy

website

Nextflow public web site

HTML

gccbosc18-training

Documentation for Nextflow training at GCC/BOSC 2018

Nextflow

socks

nextflow run socks

Nextflow

nf-sraql

Tentative Nextflow plugin for AWS Athena and Google Bigquery

Groovy

tests

Nextflow tests

Nextflow

elixir-workshop-21

Nextflow workflow workshop 2021

Nextflow

vscode-dag-preview

Experimental VSCode plugin rendering Nextflow execution DAG

TypeScript

nf-quilt

Quilt plugin for Nextflow

Groovy

trademark

Nextflow logo & trademark policy

summit

Nextflow

nf-recursion

Showcase repository for Nextflow recursion

Nextflow

nf-azure

Azure cloud plugin for Nextflow

nxf-tes-java-client

Experimental TES API client

Java

nf-tweet

Proof of concept plugin showing how to implement Nextflow plugin interacting with a foreign API

Groovy

summit-website

TypeScript

nf-nomad

Hashicorp Nomad executor plugin for Nextflow

Groovy

nf-parquet

Plugin implementing the support for Apache Parquet files (experimental)

Groovy

nf-ga4gh

GA4GH plugin for Nextflow

Java

nf-tower

Nextflow plugin providing the support for Tower

nf-kafka

nextflow plugin for events subsystems

Groovy

.github

nf-amazon

Amazon Web Services plugin for Nextflow

nxf-httpfs

Groovy

nf-wr

WR extension module for Nextflow

Groovy

flowata

unknown

Groovy

nf-wave

Wave provisioning containers plugin for Nextflow

nf-legacy-cloud

Legacy cloud support for Nextflow pipeline system

Groovy

nf-ignite

Groovy

gpt-prompt-engineer

Exploring workflow for prompt engineer with Nextflow

Nextflow

nextflow-io/faq

nextflow-io

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