neurogenomics/scFlowExamples neurogenomics/scFlowExamples

  • Stars
    star
    2
  • Language
    R
  • Created almost 5 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
neurogenomics/scFlowExamples
github

neurogenomics

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
R
65
star
2

rworkflows

Continuous integration for R packages. ๐Ÿ”€ Automates testing โœ…, documentation website building ๐Ÿ“ฆ, & containerised deployment ๐Ÿณ.
HTML
63
star
3

MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics
R
63
star
4

orthogene

๐Ÿงฌ o r t h o g e n e ๐Ÿงฌโœจโœจโœจโœจโœจโœจโœจ Interspecies gene mappingโœจโœจโœจโœจโœจ ๐Ÿฆ  ๐Ÿ” ๐ŸŒฑ ๐Ÿ” ๐ŸŒณ ๐Ÿ” ๐ŸŽ ๐Ÿ” ๐ŸŠ ๐Ÿ” ๐Ÿชฑ ๐Ÿ” ๐Ÿชฐ ๐Ÿ” ๐ŸŸ ๐Ÿ” ๐ŸฆŽ ๐Ÿ” ๐Ÿ“ ๐Ÿ” ๐Ÿฆ‡ ๐Ÿ” ๐Ÿ„ ๐Ÿ” ๐Ÿ– ๐Ÿ” ๐Ÿ ๐Ÿ” ๐ŸŽ ๐Ÿ” ๐Ÿˆ ๐Ÿ” ๐Ÿ• ๐Ÿ” ๐Ÿ ๐Ÿ” ๐Ÿ’ ๐Ÿ” ๐Ÿฆง ๐Ÿ” ๐Ÿฆ ๐Ÿ” ๐Ÿƒโ€โ™€๏ธ
R
33
star
5

reanalysis_Mathys_2019

A re-analysis of the [Single-cell transcriptomic analysis of Alzheimerโ€™s disease](https://www.nature.com/articles/s41586-019-1195-2) using a standardised data processing and pseudobulk differential expression approach
HTML
14
star
6

EpiCompare

Comparison, benchmarking & QC of epigenetic datasets
R
11
star
7

scKirby

Automated ingestion and conversion of various single-cell data formats, within and across species
R
10
star
8

labwiki

Tips, intros, and documentation for the Neurogenomics Lab. ๐Ÿง  ๐Ÿงฌ
8
star
9

EnformerCelltyping

Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.
Jupyter Notebook
6
star
10

Kayaking

Kotlin
5
star
11

templateR

Self-updating template for developing R packages.
R
4
star
12

TERRA_Tutorial

Guide to creating very simple WDL workflows and pushing them to TERRA via dockstore
4
star
13

rare_disease_celltyping

Code, data and results associated with the "Rare diseases cell-typing" project.
HTML
4
star
14

CHAS

Cell type-specific Histone Acetylation Score
R
3
star
15

MAGMA_Files_Public

Publicly shared SNP-to-gene mappings of GWAS generated by MAGMA.
HTML
3
star
16

HPOExplorer

Functions for working with the Human Phenotype Ontology data
R
2
star
17

NextFlowIntro

2
star
18

neurogenomics-lab-website

TeX
2
star
19

MotifPeeker

Benchmark Epigenomic Profiling Methods with Motif Enrichment as Key Metric
R
1
star
20

document_and_share

Strategies for documentation and sharing of data analyses.
HTML
1
star
21

MotifStats

Package for integrating peak and motif positions
R
1
star
22

rare_disease_celltyping_apps

All apps and homepage code in one place for the rare disease EWCE project.
CSS
1
star
23

RareDiseasePrioritisation

Prioritise cell-type-specific gene targets from the Rare Disease Celltyping project.
HTML
1
star
24

MSTExplorer

Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.
R
1
star
25

EpiPrepare

Preprocessing of epigenomic data from fastq files.
R
1
star
26

EWCE

R
1
star