neurogenomics/MotifStats neurogenomics/MotifStats

  • Stars
    star
    1
  • Language
    R
  • License
    GNU General Publi...
  • Created 9 months ago
  • Updated 6 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
neurogenomics/MotifStats
github

neurogenomics

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Package for integrating peak and motif positions

More Repositories

1

MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
R
65
star
2

rworkflows

Continuous integration for R packages. πŸ”€ Automates testing βœ…, documentation website building πŸ“¦, & containerised deployment 🐳.
HTML
63
star
3

MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics
R
63
star
4

orthogene

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 πŸ” 🌱 πŸ” 🌳 πŸ” 🍎 πŸ” 🍊 πŸ” πŸͺ± πŸ” πŸͺ° πŸ” 🐟 πŸ” 🦎 πŸ” πŸ“ πŸ” πŸ¦‡ πŸ” πŸ„ πŸ” πŸ– πŸ” 🐐 πŸ” 🐎 πŸ” 🐈 πŸ” πŸ• πŸ” 🐁 πŸ” πŸ’ πŸ” 🦧 πŸ” 🦍 πŸ” πŸƒβ€β™€οΈ
R
33
star
5

reanalysis_Mathys_2019

A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) using a standardised data processing and pseudobulk differential expression approach
HTML
14
star
6

EpiCompare

Comparison, benchmarking & QC of epigenetic datasets
R
11
star
7

scKirby

Automated ingestion and conversion of various single-cell data formats, within and across species
R
10
star
8

labwiki

Tips, intros, and documentation for the Neurogenomics Lab. 🧠 🧬
8
star
9

EnformerCelltyping

Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.
Jupyter Notebook
6
star
10

Kayaking

Kotlin
5
star
11

templateR

Self-updating template for developing R packages.
R
4
star
12

TERRA_Tutorial

Guide to creating very simple WDL workflows and pushing them to TERRA via dockstore
4
star
13

rare_disease_celltyping

Code, data and results associated with the "Rare diseases cell-typing" project.
HTML
4
star
14

CHAS

Cell type-specific Histone Acetylation Score
R
3
star
15

MAGMA_Files_Public

Publicly shared SNP-to-gene mappings of GWAS generated by MAGMA.
HTML
3
star
16

scFlowExamples

R
2
star
17

HPOExplorer

Functions for working with the Human Phenotype Ontology data
R
2
star
18

NextFlowIntro

2
star
19

neurogenomics-lab-website

TeX
2
star
20

MotifPeeker

Benchmark Epigenomic Profiling Methods with Motif Enrichment as Key Metric
R
1
star
21

document_and_share

Strategies for documentation and sharing of data analyses.
HTML
1
star
22

rare_disease_celltyping_apps

All apps and homepage code in one place for the rare disease EWCE project.
CSS
1
star
23

RareDiseasePrioritisation

Prioritise cell-type-specific gene targets from the Rare Disease Celltyping project.
HTML
1
star
24

MSTExplorer

Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.
R
1
star
25

EpiPrepare

Preprocessing of epigenomic data from fastq files.
R
1
star
26

EWCE

R
1
star