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MAGMA_Celltyping
Find causal cell-types underlying complex trait geneticsrworkflows
Continuous integration for R packages. π Automates testing β , documentation website building π¦, & containerised deployment π³.MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statisticsorthogene
𧬠o r t h o g e n e π§¬β¨β¨β¨β¨β¨β¨β¨ Interspecies gene mappingβ¨β¨β¨β¨β¨ π¦ π π± π π³ π π π π π πͺ± π πͺ° π π π π¦ π π π π¦ π π π π π π π π π π π π π π π π π 𦧠π π¦ π πββοΈreanalysis_Mathys_2019
A re-analysis of the [Single-cell transcriptomic analysis of Alzheimerβs disease](https://www.nature.com/articles/s41586-019-1195-2) using a standardised data processing and pseudobulk differential expression approachEpiCompare
Comparison, benchmarking & QC of epigenetic datasetsscKirby
Automated ingestion and conversion of various single-cell data formats, within and across specieslabwiki
Tips, intros, and documentation for the Neurogenomics Lab. π§ π§¬EnformerCelltyping
Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.Kayaking
templateR
Self-updating template for developing R packages.TERRA_Tutorial
Guide to creating very simple WDL workflows and pushing them to TERRA via dockstorerare_disease_celltyping
Code, data and results associated with the "Rare diseases cell-typing" project.CHAS
Cell type-specific Histone Acetylation ScoreMAGMA_Files_Public
Publicly shared SNP-to-gene mappings of GWAS generated by MAGMA.scFlowExamples
NextFlowIntro
neurogenomics-lab-website
MotifPeeker
Benchmark Epigenomic Profiling Methods with Motif Enrichment as Key Metricdocument_and_share
Strategies for documentation and sharing of data analyses.MotifStats
Package for integrating peak and motif positionsrare_disease_celltyping_apps
All apps and homepage code in one place for the rare disease EWCE project.RareDiseasePrioritisation
Prioritise cell-type-specific gene targets from the Rare Disease Celltyping project.MSTExplorer
Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.EpiPrepare
Preprocessing of epigenomic data from fastq files.EWCE
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