Discover neelsoumya/bioinformatics_resources Open Source project

Material and notes for teaching reproducible science in R

teaching_reproducible_science_R

dsSurvivalbookdown

A bookdown demonstrating how to build survival models using the dsSurvival package in DataSHIELD

TeX

public_open_source_data_science

A repository of open source data science projects for social good

Survival functions (client side) for DataSHIELD. Package for building survival models, Cox proportional hazards models and Cox regression models in DataSHIELD.

dsSurvivalClient

HTML

butterfly_detector

Basic tutorials and code for teaching deep learning and machine learning

Shell script to join multiple PDFs using ghostscript

join_pdf_shell_script

A repository of free resources to teach yourself mathematics

open_data

Open data

mathematics

teaching_resources

Compilation of teaching resources

outreach_ppi

Outreach and PPI resources for explaining AI to the public

survival_models

A repository of code and resources for survival models

HTML

meditator

Miscellaneous tools for meditation

bayesian_inference_linear_mixed_effect_models_pymc3

Example code to perform linear mixed effects regression in a Bayesian setting using the PyMc3 framework

Resources for explaining AI to the public and outreach activities

ai_outreach

ramanujan_number_generator

Generating Ramanujan cab numbers

PostScript

complex_stories_explanations

Complex stories as explanations for machine learning models

very basic UNIX commands for newbies

very_basic_unix

paper_preprints

Preprints of papers by Soumya Banerjee

TeX

neelsoumya

About me (Soumya Banerjee)

pymc_examples

Examples and simple scripts for probabilistic programming using PyMC3

life_objective_viewpoint

An objective and complex systems viewpoint of life.

zenAI

pheatmap_example

Example scripts to generate heatmaps using the pheatmap library

perspective_epidemics_conflict_zones

Perspective on epidemics in conflict zones. Code, parameters and installation instructions.

programming_resources

Resources for learning and teaching programming.

essential_shell_scripts

Essential shell (bash) scripts

Tutorial and examples for Gaussian processes

gaussian_process_tutorial

dsMiscellaneous

Miscellaneous tools for use in DataSHIELD

basic_statistics

Repository for teaching basics of statistics for machine learning

generic_random_forest_regression

Computational art for dynamical systems

deep_dali

NetLogo

TuneableCounterfactuals

How to work with domain experts in the field of AI

cricket_scores

cricket scores

public_talk_AI_India

miscellaneous_interests

Miscellaneous interest

working_with_domain_experts

latexcommands

Repository of latex commands

mathematical_models

Repository for teaching mathematical models

misc_papers

Miscellaneous papers (other projects)

awards

Awards (feel good folder) public

Scripts to parse output from PSortB bioinformatics package.

psortb_parsing

basic_python

Python cheatsheet

Explainable AI applied to patient stratification

patient_stratification_explainable_AI

Ma paintings writing (Kalyani Banerjee)

Ma_paintings_writing

haskell

Haskell

project_ideas

Project ideas for students

visualization_lecture

visualization lecture

metaanalysis_models

Resources and code for meta-analysis models

accelerate

dsSurvival2bookdown

A bookdown demonstrating how to build survival models using the dsSurvival 2.0 package in DataSHIELD

bootstrap_example_python

A simple example for bootstrapping in python and R.

reading list journal club

reading_list_journal_club

dsCoxClient

Client for Cox functions in DataSHIELD

nlp_resources

Resources and teaching material for Natural Language Processing (NLP)

A practical in R for teaching supervised machine learning

very_basic_R

very basic R for newbies

scmap_single_cell

practical_supervised_machine_learning

public_supervised_machine_learning

A lecture on supervised machine learning

lymph node inspired algorithms

writing_productivity

Writing and productivity

lymph_node_inspired_algorithms

old_software

Old software

travel

forecasting_port_throughput

Forecasting port throughput

Essential miscellaneous utilities

abm_old

An old ABM

C++

essential_utilities_miscellaneous