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BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentencesbluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).BLUE_Benchmark
BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.NegBio
📰 High-performance tool for negation and uncertainty detection in radiology reportsBioWordVec
DeepSeeNet
👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.PhenoTagger
PhenoTaggerAb3P
Abbreviation definition dection library trained on PubMed abstractsPubMed-Best-Match
Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searchesTeamTat
Text annotation tool for team collaborationTrialGPT
Code and data for TrialGPT.COVID-19-CT-CXR
COVID-19-CT-CXR, a public database of COVID-19 CXR and CT imagesMedCalc-Bench
Benchmarking the medical calculation capabilities of large language models.ezTag
Web interface that allows users to perform computer-assisted text annotationBioC-JSON
Tool that converts between BioC XML files and BioC JSON filesNQAC
pubtator-gpt
DeepRel
A convolutional neural network model for relation extraction.NCBITextLib
Software library for building a large-scale data infrastructure for text miningBC6PM
Evaluation scripts for BioCreative VI Precision Medicine TrackVarTriage
PubTator-Covid19
CovidTermVar
TaggerOne
General-purpose tagger for joint named entity recognition and normalization. Includes models for both diseases and chemicals (drugs) in biomedical publications.Medical-Imaging-Causal-Fairness
Unmasking-GPT-Bias
PhenoRerank
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