ncbi-nlp/BioC-JSON

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Python
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Other
Created almost 8 years ago
Updated almost 8 years ago

ncbi-nlp/BioC-JSON

ncbi-nlp

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Tool that converts between BioC XML files and BioC JSON files

BioSentVec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

Jupyter Notebook

bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

BLUE_Benchmark

BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

NegBio

📰 High-performance tool for negation and uncertainty detection in radiology reports

BioWordVec

DeepSeeNet

👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

PhenoTagger

Ab3P

Abbreviation definition dection library trained on PubMed abstracts

PubMed-Best-Match

Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches

TeamTat

Text annotation tool for team collaboration

ML_Net

ML-Net is a novel end-to-end deep learning framework for multi-label classification of biomedical tasks. ML-Net combines the label prediction network with a label count prediction network, which can determine the output labels based on both label confidence scores and document context in an end-to-end manner.

TrialGPT

Code and data for TrialGPT.

COVID-19-CT-CXR

COVID-19-CT-CXR, a public database of COVID-19 CXR and CT images

MedCalc-Bench

Benchmarking the medical calculation capabilities of large language models.

ezTag

Web interface that allows users to perform computer-assisted text annotation

NQAC

pubtator-gpt

DeepRel

A convolutional neural network model for relation extraction.

NCBITextLib

Software library for building a large-scale data infrastructure for text mining

BC6PM

Evaluation scripts for BioCreative VI Precision Medicine Track

VarTriage

PubTator-Covid19

CovidTermVar

TaggerOne

General-purpose tagger for joint named entity recognition and normalization. Includes models for both diseases and chemicals (drugs) in biomedical publications.

Medical-Imaging-Causal-Fairness

Unmasking-GPT-Bias

Jupyter Notebook

PhenoRerank