nanxstats/bcpm-msaenet

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R
License
MIT License
Created over 4 years ago
Updated almost 3 years ago

nanxstats/bcpm-msaenet

nanxstats

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Solution for the precisionFDA Brain Cancer Predictive Modeling Challenge using msaenet

awesome-shiny-extensions

🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny

ggsci

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

liftr

🐳 Containerize R Markdown documents for continuous reproducibility

hugo-tanka

📝 A minimalist, text-oriented, and performant theme for Hugo/blogdown.

awesome-webr

😎 A curated list of awesome resources for learning WebR, a version of the statistical language R compiled for the browser and Node.js using WebAssembly.

protr

🧬 Toolkit for generating various numerical features of protein sequences

deep-learning-recipes

🍱 R implementation for selected machine learning methods with deep learning frameworks (Keras, Tensorflow)

hdnom

🔮 Benchmarking and visualization toolkit for penalized Cox models

Rcpi

💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery

imgsvd

Shiny App for Image Compression via SVD

stackgbm

🌳 Stacked Gradient Boosting Machines

hugo-renga

A Bootstrap-based minimalist theme for Hugo/blogdown.

sdml

Supervised Distance Metric Learning with R

enpls

Algorithmic framework for measuring feature importance, outlier detection, model applicability evaluation, and ensemble predictive modeling with (sparse) partial least squares regressions.

msaenet

🧲 Multi-step adaptive estimation for reducing false positive selection in sparse regressions

nanxstats.github.io

Personal Website of Nan Xiao (deploy)

targetnet

Shiny Web Application for Drug Target Identification with Large-Scale Public Binding Affinities Data

dockflow

Containerize Bioconductor Workflows

MEF

Datasets and source code for reproducing the paper 'Integrating multiple evidence sources to predict adverse drug reactions based on systems pharmacology model'.

tidychem

⚗️ Tidy Chemical Data

sbgr

R Client for Seven Bridges Genomics API (v1)

RECA

Relevant Component Analysis for Supervised Distance Metric Learning

logd74

A high-quality hand-curated logD7.4 dataset of 1,130 compounds

grex

Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data

signify

Shiny Web Application for Making Your p-value Sound Significant

oneclust

🥇 Maximum homogeneity clustering for one-dimensional data

shiny-loading-skeleton

Shiny app template with an animated, fully customizable skeleton loader

vscode-textmate-rstheme

A light theme for Visual Studio Code inspired by the TextMate (default) theme in RStudio IDE.

nanx.me

Personal website of Nan Xiao (source)

tea-sea-cha-land

Spatial-temporal dataset on how the word "tea" spread around the globe: tea if by sea, cha if by land.

ost

Open Source Typography: A Curated Lookbook for Creative Expression

ssw-r

🚀 R interface for SSW, a fast implementation of the Smith-Waterman algorithm using SIMD

r-future-recipes

🚀 Guides and examples for the future framework in R

shiny-highlight-rmarkdown

Lightweight R Markdown Syntax Highlighting in Shiny

hugo-nanx2020

Minimalist Hugo theme built on Bootstrap 4

rankv

Rank aggregated signal detection for VAERS data

protrweb

Shiny Web Application for Protein Sequence-Derived Descriptor Computation

hdnom-appmaker

Shiny app template to make your own nomogram-based online prediction apps

conjugate-normal-umkv

Shiny app - Bayesian inference for normal mean (known variance)

shiny-fcp-loader

🚧 Shiny app skeleton with a loading screen that aims to minimize the time to first contentful paint (FCP)

gpu

Deep Learning GPU Selector

cats

Joint power analysis for non-symmetric two-stage case-control designs

hugo-nanx2021

Minimalist Hugo theme built on Bootstrap 5

exp2vec

🧬 Tissue-specific gene embeddings trained on GTEx data

logreg

Regularized logistic regressions with computational graphs

ash-docker

ash configuration for Docker

ChromaClust

Image color topic modeling using fastTopics

sbpack-r

An R package to pack and upload CWL apps to Seven Bridges powered platforms

costemplate-legacy

research-diagrams

A curated collection of insightful diagrams from research papers

rmarkdown-quarto-mlmodern

Authoring R Markdown and Quarto PDF documents using the MLModern typeface

r-readability-parser

Minimal R wrapper for Readability.js written with {V8}

cwl-formatter

Shiny app to format Common Workflow Language (CWL) apps

dotfiles