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DeepLIIF
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]CEP
Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]Physics-ArX
Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]ImPartial
Interactive deep learning whole-cell segmentation and thresholding using partial annotationsCIR
Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]SPT
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex imagescoincidencetest
Exact test for significant feature combinationcg-gnn
Create cell graphs from pathology slide data and train a graph neural network to predict patient outcomes for SPT.Love Open Source and this site? Check out how you can help us