Discover muschellij2/mni Open Source project

Data and Code for Methods in Biostatistics in R

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biostatmethods

rscopus

Scopus Database API Interface to R

diffr

R package for creating code differences in JavaScript based on codediff.js

Data for Neurohacking MOOC

fslr

FSL-R Interface package

Neurohacking_data

ichseg

ICH Segmentation of CT scans

CT_BET

Paper on Brain Extraction for CT Imaging

Shiny Application using CMS Health data spatially

Shiny_Health_Data

imaging_in_r

Neuroimaging short course

Open Neuroimaging Datasets

open_neuro

Eve_Atlas

Eve Atlas used for segmentations

lungct

Segmentation and Analysis of Lung CT scans

open_ms_data

Open MS Data

matlabr

R Package For Calling Matlab Through System

brainR

BrainGL R Package

Parses Github README so it can "render" LaTeX equations.

latexreadme

papayar

Wrapper for Papaya viewer to R

WhiteStripe

WhiteStripe Package

neurohcp

Human Connectome Project Interface with R

Neuroimaging_in_R

Neuroimaging in R Talk

FSL 6.0.0 Sources (without data)

FSL6.0.0

intro_to_r

freesurfer

spm12r

dcm2niir

R Package Container for dcm2nii

neuroc

Neuroconductor Content

UK Biobank Acceration Analysis

glassdoor

R Glassdoor API

biobankr

extrantsr

R Package to build on ANTsR

papayaWidget

Widget for papaya!

Minimal Working Example of how to create a WebGL object from RGL

RGL_Export

process_head_ct

Neuroconductor Base Package

robex

Robust Brain Extraction

neurobase

recordscreen

Record Screen Instruction

nsrr

Interface to National Sleep Research Resource

webofscience

Web of Science API

drammsr

Create R package for DRAMMS

C++

high_res_ct_template

High Resolution CT Template Paper and Images

R toolbox for CIFTI files

blsa_mims

cifti

smi_2019

Wrapper Functions for 'AFNI' software in R

afnir

fedreporter

NIH Exporter Downloader

gifti

GIFTI package for R

neuro_cluster

Setup for doing neuroimaging on the cluster.

talkr

Talk Through Data Analysis

neuro_backend

Backend Package

Neurovault Database API Access in R

flexconn

FLEXCONN Model

neurovault

HopStat

A repository of all my posts on HopStat

Quick Slidify Presentation (and embedded WebGL object) about Slidify/KnitR/Shiny

bftools

BioFormats Tools

Slidify_Knitr_Shiny

JHUPhD

Information for Graduating PhDs from JHU

updated google citation package

gcite

mrtrix

Port of MRTrix software

My CV

R package for image intraclass correlation (I2C2)

I2C2

dcmtk

Wrapper for 'DICOM' Toolkit ('DCMTK')

Coerce Actigraphy to Summarized Experiments

SummarizedActigraphy

malf.templates

Templates from Multi-Atlas Label Fusion Challenge for MICCAI Edit Add topics

jhur

Introduction to R

fs_paper

Freesurfer Paper for R Journal

Neuroimaging reproducibility and R for JSM 2018 talk

jsm_2018

R wrapper for Stripe Checkout with Shiny

checkout

fragmentation

Fragmentation Methods for Accelerometry Data

neuropaper

Structural Subgroup guide to neuroimaging papers

FSLR_Paper

Paper for fslr package

Osirix Build for Yosemite

osirix

C++

write.gt3x

Writes GT3x Files

Lung_CT_Analysis

Analysis of Lung CT from NIH

ENAR_2015

Code for ENAR 2015 App

aghast

Another Github Actions Service Tool

cq500_code

kirby21

Kirby21 R Data Package

nitrc

R Package to interface with NITRC

ENAR_Over_Time

Look at the abstracts and affiliations of ENAR over the past few years.

FSLR_Data

Data From FSLR Paper

ich_shiny

New and Improved Dashboard

matplotVis

matplot visualization for healthvis package http://healthvis.org/

FLEXCONN Model Wrapped in R

flexconnr

massr

MASS for R

CMake

muschpack

Build Status of All John 'Muschelli' Packages

sri24

SRI24 Atlas: Normal Adult Brain Anatomy

Shiny_model

Shiny App that presents models based on Covariates and can change outcomes

r_packages

Tutorials on Making R Packages

MS Lesion Data Set Packaged

ms.lesion

dcm2nii_shiny

Shiny App that will convert dcm2nii online

ggneuro

R package for plotting images using ggplot2

muschellij2.github.io

Simultaneous Truth and Performance Level Estimation '(STAPLE)'

stapler

CZI

Grant submission for Neuroconductor to https://chanzuckerberg.com/

R Package to Wrap ITK-SNAP

itksnapr

CT_Pipeline

Pipeline for Converting CT data

msmri

Open Multiple Sclerosis Magnetic Resonance Imaging Data

clusterRundown

R Package for Rundown of Cluster

epi_click

Clicking Epi Plots

NiftiArray

HDF5 Delayed Array for Nifti Objects

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fixing_dicom_files

Set of Tutorials on Fixing DICOM files