• Stars
    star
    1
  • Language
    Perl
  • Created over 5 years ago
  • Updated over 5 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

protein function prediction using protein domain co-occurrence network (pdcn - ranked as one of the best methods in CAFA1 competition

More Repositories

1

DNCON2

Deep convolutional neural networks for protein contact map prediction
Perl
23
star
2

deepdist

Deep learning prediction of protein residue-residue distances
Python
23
star
3

multicom

The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.
Perl
17
star
4

CONFOLD2

Improved ab initio protein structure reconstruction
Perl
15
star
5

DNSS2

Deep learning architectures for protein secondary structure prediction (version 2)
Perl
10
star
6

CONFOLD

Contact-based protein structure prediction
Perl
10
star
7

DeepSF

Deep convolutional neural network for mapping protein sequences to folds
Perl
8
star
8

DNSS

Deep learning networks for protein secondary structure prediction
Perl
7
star
9

Chromosome3D

Reconstructing Three-Dimensional Chromosomal Structures from Hi- C Interaction Frequency Data using Distance Geometry Simulated Annealing
Perl
6
star
10

DeepCovQA

Deep convolutional neural networks for protein model quality assessment
Perl
4
star
11

DNTor

Deep learning networks for protein torsion angle prediction
Python
4
star
12

UniCon3D

UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling. The tool was developed in Bioinformatics, Data Mining and Machine Learning (BDM) Lab at the University of Missouri, Columbia, USA.
C++
4
star
13

EMAP

The system of estimating model accuracy for protein structures
Perl
2
star
14

ConEVA

Toolbox for Assessment of Protein Contacts
DIGITAL Command Language
2
star
15

CNNQA

Deep convolutional neural networks for protein model quality assessment
Perl
1
star
16

profun

Profun - protein function prediction tool (one of the top methods in CAFA2 competition)
Perl
1
star
17

DeepQA

Deep Belief Networks for Single Protein Structural Model Quality Assessment
Perl
1
star
18

DoBo

Perl
1
star