mukamel-lab/snmcseq

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Python
Created over 7 years ago
Updated almost 5 years ago

mukamel-lab/snmcseq

mukamel-lab

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Tools for computational analysis of single nuclei methylC-Seq data, as described in Luo, Keown et al. (2017)

CellSort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

EpiAttend

Single cell epigenome modeling

mop

Multiomics Processing

SingleCellFusion_Loompy-Obsolete

Methods for integrating multimodal single cell sequencing data, including transcriptome (RNA-Seq) and epigenome (DNA methylation, ATAC-Seq)

BICCN-Mouse-MOp

Analysis notebooks for BICCN mouse primary motor cortex project.

Jupyter Notebook

slavseq_browser

IGV browser for viewing slav-seq data