mukamel-lab/BICCN-Mouse-MOp

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Updated about 4 years ago

mukamel-lab/BICCN-Mouse-MOp

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Analysis notebooks for BICCN mouse primary motor cortex project.

CellSort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

snmcseq

Tools for computational analysis of single nuclei methylC-Seq data, as described in Luo, Keown et al. (2017)

EpiAttend

Single cell epigenome modeling

mop

Multiomics Processing

SingleCellFusion_Loompy-Obsolete

Methods for integrating multimodal single cell sequencing data, including transcriptome (RNA-Seq) and epigenome (DNA methylation, ATAC-Seq)

slavseq_browser

IGV browser for viewing slav-seq data