There are no reviews yet. Be the first to send feedback to the community and the maintainers!
covid-sim
This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.odin
α© A DSL for describing and solving differential equations in RCOVID19_CFR_submission
Repository for all scripts required to replicate the CFR analysis for paper submission.squire
SEIR transmission model of COVID-19. Documentation at:covid19-forecasts-orderly
sircovid
individual
R Package for individual based epidemiological modelsprovisionr
π¦π¦β‘οΈποΈ Provision a library of R packagesepireview
PhyDyn
PhyDyn: Epidemiological modelling in BEASTrrq
πππ Lightweight Redis queuesmcstate
β¨π§Ή Monte-Carlo State Space Modelsdust
β¨β¨β¨ Iterate multiple realisations of stochastic modelsskygrowth
Phylodynamic inferencereactidd
This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (REACT) study. It includes both code and data. For code-related enquiries please contact Oliver Eales: oliver (dot) eales (at) unimelb (dot) edu (dot) audde
π¦ππ Delay differential equation solverSIMPLEGEN
Simulating Plasmodium Epidemiological and Genetic Databootstrap4-collapse
Just all the css and js you need from Bootstrap4 to implement their collapse functionality.ring
π Ring buffersdrjacoby
Flexible Markov chain monte carlo via reparameterizationdidehpc
βοΈπ»βοΈ Support for the DIDE clusternimue
syncr
π R interface to rsyncglobal-lmic-reports
Global LMIC COVID-19 reports. Updated to include HICs. Previous data is periodically backed up at https://mrcdata.dide.ic.ac.uk/global-lmic-reports/naomi
Naomi model for subnational HIV estimationreestimate_covidIFR_analysis
Repo for work on ICL Report 34 and subsequent Comm Med Methods Paperspam.mpxv
Stochastic pair approximation model for Monkeypox virusglobal-lmic-reports-orderly
COVID-19 forecast reports for LMICsdeterministic-malaria-model
Deterministic malaria model using odincinterpolate
πβ‘οΈγ°οΈ Interpolating functions from C, in Rmalariasimulation
The malaria modeleppasm
EPP Age/Sex Model (EPP-ASM)Brazil_COVID19_distributions
This repository contains code and data for the "Inference of COVID-19 epidemiological distributions from Brazilian hospital data" manuscriptinfectiousdiseasemodels-2022
Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases - 2022tfpscanner
Transmission fitness polymorphism scannersarscov2-transmission-england
first90release
covid-vaccine-impact-orderly
odin.js
Compile odin models to javascriptdemogsurv
Analysis of demographic indicators from Demographic and Health Surveys (DHS) and other household surveyscontact_patterns
π€π€§ Systematic review of contact surveys relevant to transmission of respiratory pathogens π€§π€epihawkes
welcome
πππ Get started at mrc-ideapothecary
ππ₯π SEIR Model of COVID-19 Transmission for Modelling Impact of Treatments and Therapeutics ππ₯πshinyq
ππΆπΆπΆπ shiny application with a queueodin-dust-tutorial
context
β»οΈ Reproduce an environmentqueuer
πΆπΆπΆ Prototype general queueRMAPI
Mapping Averaged Pairwise Information in RmalariaModelFit
Rcpp package containing code for fitting malaria model by MCMCmalariaEquilibrium
conan
π¦π¦β‘οΈποΈ Conan the Librarian βοΈcovfefe
Flexible simulation of P. falciparum genetic datadopri-js
π¦ππ Ordinary and delay differential equation solvershiny_dide
ππ₯π DIDE shiny server configurationinfectiousdiseasemodels-2019
Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseasespriority-pathogens
https://mrc-ide.github.io/priority-pathogens/PlasmoMAPI
Mapping Plasmodium Spatial Connectivity from Genetic Datasarscov2-b.1.1.7
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)typochallengedata
Analysing data collected in typo challengescott
Structured COalescent Transmission Tree simulationstochasticity-practical
β¨πβ¨ Shiny application for stochasticity practicalOmicronSeverity
Source code to accompany Lancet Paper, Nyberg, Ferguson et al, March 2022sarscov2-roadmap-england
esft
wodin-msc-idm-2023
tfpbrowser
Shiny app for tfpscannercovid19_mainland_China_report
MissingCases
COVIDCurve
Simple Inference of age-specific IFRs for COVID-19 using a Bayesian statistical modelcovid_global_impact
covid_global_impactccmpp.tmb
Cohort component population projection and reconstruction model in TMBsiR
π€ Individual-based SIR models in R and Rcpp π€bhrp
Code for linking Bellman Harris with Renewal Processestypochallenge
βοΈπβ Typo challengeodin.dust
Compile odin to dustPOLICI_africa_south_america
Shiny app to show African and South American YF coveragemint
Malaria Indicators Toolmlesky-experiments
wodin-msc-idm-2022
drat
π¦π¦π¦ drat repositoryspimalot
hermione
YFestimation
outbreakteachR
Demonstration of analysis associated to "paper outbreak" teaching practicalMIPanalyzer
Filtering and analysis of MIP dataYFburden
global-lmic-reports-staging
Daily updated LMIC COVID-19 reports (Staging)buildr
π·π¦ Build packages on requesthint-deploy
Deployment tool for hintumbrella
βοΈ Rainfall & Seasonality βοΈcepi_retrospective_analysis
orderly2
msc-istda-2019
Introduction to Statistical Thinking and Data Analysis, MSc Epidemiology and MSc Health Data Analytics 2019YellowFeverModelEstimation2019
beers
π» π¦ Beers Interpolation and Subdivision (my first R package)novel-data-streams
heartbeatr
ππ»π Redis heartbeat supportmrc-imperial-poster-template
icl-hbv
The HBV model developed at Imperial College LondonLove Open Source and this site? Check out how you can help us