mooreryan/lsa_for_genomes

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2
Language
Ruby
License
MIT License
Created about 7 years ago
Updated almost 7 years ago

mooreryan/lsa_for_genomes

mooreryan

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Latent semantic analysis pipeline for genomes and metagenomes

ocaml_python_bindgen

Generate Python bindings via pyml from OCaml value specifications

iroki

Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.

markdown-dnd-images

Drag and drop images directly into markdown-mode emacs buffer

gleam_qcheck

QuickCheck-inspired property testing with integrated shrinking for Gleam

iroki_cli

NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki

valgrind_docker

Valgrind in Docker

gleam_fmt

Type-safe (string) formatting for Gleam

pasv

PASV -- Protein active site validation

lisby

Lisp interpreter in Ruby

aai

Multi-genome amino acid similarity pipeline

computational_lab_notebooks

CLI program to help you manage your lab notebook with git and git annex

eigengenomes

A C and Python implementation of latent strain analysis for eigengenome partitioning.

midpoint-root

Simple ETE script for midpoint rooting trees

clj-parse-fasta

Parse fasta files in Clojure

ZetaHunter

Reproducible taxonomic classification for Zetaproteobacteria and other poorly resolved taxa.

divnet-rs

A fast implementation of DivNet

IdentiBin

I don't even know what it does!

zach

¡¡ZACH ATTACK!!

parse_fasta

Easy-peasy fasta file parsing

cljs_reagent_react_vis_blog_materials

ocaml_vg_example_plot

A small plot example using OCaml, Js_of_ocaml, Brr, and Vg

bio_io

An OCaml library that provides programmatic access to common file formats used in bioinformatics like FASTA files.

qc

Standard qc for paired end illumina libraries

derep_seqs

Dereplicate long sequences

InteinFinder

InteinFinder: automated intein detection from large protein datasets

coda

Fast compositional data analysis

bio_illumina_mmgs

Docker image for analyzing Illumina metagenomes

featuretable

mmseqs_iterator

ascii_plots

Make snazzy plots in your terminal!

GBParsy

Source and wiki for GBParsy from Google Code Archive

chopyk_neighborhoods

Chop Chop Chopyks!

mgs_bias_app

Demonstration of MGS bias and its effect on community structure

color_tree

Coloring and editing newick files for use in FigTree viewer

cerise

CERISE: ClustEr RestrIcted homology SEarch

get_viral_genomes

Pipeline to get viral genomes and info.

aoh_cv_website

redsvd

A fork of redsvd (https://code.google.com/archive/p/redsvd/)

biplotr

Give me data, and I'll give you a snazzy biplot!

avoid_the_asteroids

Watch out for them asteroids!

github_mkdocs_template

GitHub actions + Mkdocs template for static site generation

biocrystal

Open source bioinformatics library for Crystal

rhode_island_16s

Rhode Island 16S stuff

little_logger

A tiny, little logger for OCaml 💖

ZetaHunter_examples

Example data and outputs for ZetaHunter.

docker_images

The Grand Docker Images Master Repo!!!

grep_seqs

Grep sequences from seq files.

viral_abundance

bin_coverage

Coverage plots for bins

derep

shannon

Simple Ruby gem to calculate Shannon entropy