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ij_textbook2
CMCI textbook 2, for ImageJ macro coursereproducible_bioimage_analysis
NEUBIAS_AnalystSchool2020
MultiStackRegistration
Modified version of MultiStackRegistration, for use from scripts.ImageJMacro_Highlighter
syntax high lighter for ImageJ macro, for vim and Notepad++NEUBIAS_AnalystSchool2018
NEUBIAS Bioimage Analyst School Documentationij_textbook1
textbook for the CMCI course (part 1)NEUBIAS_Bioimage_Analyst_Course2017
NEUBIAS_AnalystSchool2019
NEUBIAS Bioimage Analyst School 2019GLCM2
calculates GLCM, to make it friendly for scripting.NucleusRimIntensityMeasurementsV2
ParticleTrackerExt
add data export directly to Result tablepygments_lexer_IJmacro
CourseUtil
EMBL Image Processing and Analysis Course samples, links and plugins.ijmacros
ImageJ macros, javascripts and jython codes for image processing and analysisBFImageConv
modified image converter for Ruben3Dviewer_TrackVisualization
3D-DotDetection
Scripts
Python and IgorPro Procedure Files (for now)vec9
optical flow estimation with 2D time seriesCorrectBleach_
a collection of bleach correction methodsBoryProject
segmentation and 3d linking (http://cmci.github.io/BoryProject/)DotLinker
linking segmented dotsJacobImaris
imagestab
Extend Image Stabilizer ImageJ plugin, registration based on Lukas-Kanade gradient method.IJ_BCautoMacro
Automatic contrast enhancement, ImageJ macro version.try_git
RadialProfileV2
RadialProfile Plugin of ImageJ upgraded for use from ImageJ macro and Javascript.saiboukougaku
IJ_DropMacro
WorkflowAndComponents-TheNEUBIASConcepts
ServerIJ
LauncherForRemoteImageJtango
ImageJ plugin TANGO - Tools for Analysis of Nuclear Genome OrganizationCourseModules
collection of teaching materialsdirectionalityPractical
practical course protocol for EMBO 2011 cell biology course, 2012 Predoc courseemblTools
misc functionalitiesLove Open Source and this site? Check out how you can help us