miracum/c19ss2021

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miracum/c19ss2021

miracum

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COVID-19 SpringSchool 2021

fhir-pseudonymizer

A REST service to pseudonymize and anonymize FHIR® resources.

fhir-gateway

A thin layer between FHIR REST clients and resource processing pipelines.

ahd2fhir

A REST service for mapping text analysis results from Averbis Health Discovery to FHIR resources.

dqa-dqastats

Automated Data Quality Assessment. (Mirror of https://gitlab.miracum.org/miracum/dqa/dqastats)

recruit

A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR® and the OMOP CDM

kafka-fhir-to-server

Reads resources from an Apache Kafka topic and sends them to a FHIR server.

FHIR-Facade

vfps

A very fast and resource-efficient pseudonym service.

misc-dizutils

Mirror of UKER internal git

kafka-fhir-serializer

Kafka De-/Serializer for FHIR® resources in JSON format.

charts

Repository for Helm Charts

misc-diztools

Set of useful functions for R (Mirror of UKER internal git)

loinc-conversion

REST service that converts LOINC codes and UCUM units to a standardized representation

demo-kafka-spark-pipeline

Jupyter Notebook

simple-aiokafka

Simple wrapper for the AIOKafka library using pydantic configuration parsing

MIRACUM-Mapper-2.0-backend

dqa-dqagui

Mirror of https://gitlab.miracum.org/miracum/dqa/dqagui

dqa-miracumdqa

The MIRACUM DQA Tool - Automated Data Quality Assessment within the MIRACUM consortium (Mirror of https://gitlab.miracum.org/miracum/dqa/miracumdqa).

dqa-mdr-connector

Fork from https://gitlab.miracum.org/miracum/dqa/dqa-mdr-connector

pathling-s3-import

Tool for importing ndjson files from object storage buckets to a Pathling server

clearly-sigident_vignettes

Mirror of https://gitlab.miracum.org/clearly/sigident_vignettes

clearly-sigident.func

Mirror of https://gitlab.miracum.org/clearly/sigident.func

registry-on-fhir

A clinical trial registry based on HL7 FHIR®

clearly-tromics

Mirror of https://gitlab.miracum.org/clearly/tromics

clearly-sigident.preproc

Mirror of https://gitlab.miracum.org/clearly/sigident.preproc

clearly-sigident

Mirror of https://gitlab.miracum.org/clearly/sigident

racoon-combine-fdpg-labexport

Code for the extraction of lab values of the local DIZ to supply to the RACOON subproject COMBINE

obds-to-fhir

This project contains a Kafka Stream processor that creates FHIR resources from oBDS-XML data and writes them to a FHIR Topic.