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TDC
Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Sciencenimfa
Nimfa: Nonnegative matrix factorization in Pythondecagon
Graph convolutional neural network for multirelational link predictionTFC-pretraining
Self-supervised contrastive learning for time series via time-frequency consistencyUniTS
A unified multi-task time series model.PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)graphml-tutorials
Tutorials for Machine Learning on GraphsSubGNN
Subgraph Neural Networks (NeurIPS 2020)Raindrop
Graph Neural Networks for Irregular Time SeriesGraphXAI
GraphXAI: Resource to support the development and evaluation of GNN explainersscikit-fusion
scikit-fusion: Data fusion via collective latent factor modelsTxGNN
TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered designG-Meta
Graph meta learning via local subgraphs (NeurIPS 2020)Raincoat
Domain Adaptation for Time Series Under Feature and Label Shiftsohmnet
OhmNet: Representation learning in multi-layer graphsPINNACLE
Contextual AI models for single-cell protein biologyGNNGuard
Defending graph neural networks against adversarial attacks (NeurIPS 2020)SHEPHERD
SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseasesGNNDelete
General Strategy for Unlearning in Graph Neural NetworksTimeX
Time series explainability via self-supervised model behavior consistencycrank
Prioritizing network communitiesSPECTRA
Spectral Framework For AI Model Evaluationpathways
Disease pathways in the human interactomefastGNMF
Fast graph-regularized matrix factorizationPDGrapher
Combinatorial prediction of therapeutic perturbations using causally-inspired neural networksfusenet
Network inference by fusing data from diverse distributionsmedusa
Jumping across biomedical contexts using compressive data fusionscCIPHER
scCIPHER: Contextual deep learning on single-cell-enriched knowledge graphs in neurological disorderslife-tree
Evolution of protein interactomes across the tree of lifenimfa-ipynb
IPython notebooks demonstrating Nimfa's functionalityngmc
Network-guided matrix completionBMI702
Biomedical Artificial IntelligenceAWARE
AWARE: Contextualizing protein representations using deep learning on interactomes and single-cell experimentsdata-mining-unipv
Short Course on Data Mining at University of Paviacollage-dicty
Gene prioritization by compressive data fusion and chainingcopacar
Collective pairwise classification for multi-way (multi-relational) data analysismims-harvard.github.io
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