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TDC
Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Sciencenimfa
Nimfa: Nonnegative matrix factorization in Pythondecagon
Graph convolutional neural network for multirelational link predictionTFC-pretraining
Self-supervised contrastive learning for time series via time-frequency consistencyUniTS
A unified multi-task time series model.PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)graphml-tutorials
Tutorials for Machine Learning on GraphsSubGNN
Subgraph Neural Networks (NeurIPS 2020)Raindrop
Graph Neural Networks for Irregular Time SeriesGraphXAI
GraphXAI: Resource to support the development and evaluation of GNN explainersscikit-fusion
scikit-fusion: Data fusion via collective latent factor modelsTxGNN
TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered designG-Meta
Graph meta learning via local subgraphs (NeurIPS 2020)Raincoat
Domain Adaptation for Time Series Under Feature and Label Shiftsohmnet
OhmNet: Representation learning in multi-layer graphsPINNACLE
Contextual AI models for single-cell protein biologyGNNGuard
Defending graph neural networks against adversarial attacks (NeurIPS 2020)SHEPHERD
SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseasesGNNDelete
General Strategy for Unlearning in Graph Neural Networkscrank
Prioritizing network communitiesSPECTRA
Spectral Framework For AI Model Evaluationpathways
Disease pathways in the human interactomefastGNMF
Fast graph-regularized matrix factorizationPDGrapher
Combinatorial prediction of therapeutic perturbations using causally-inspired neural networksfusenet
Network inference by fusing data from diverse distributionsmedusa
Jumping across biomedical contexts using compressive data fusionscCIPHER
scCIPHER: Contextual deep learning on single-cell-enriched knowledge graphs in neurological disorderslife-tree
Evolution of protein interactomes across the tree of lifepatient-safety
Population-scale patient safety data reveal inequalities in adverse events before and during COVID-19 pandemicnimfa-ipynb
IPython notebooks demonstrating Nimfa's functionalityngmc
Network-guided matrix completionBMI702
Biomedical Artificial IntelligenceAWARE
AWARE: Contextualizing protein representations using deep learning on interactomes and single-cell experimentsdata-mining-unipv
Short Course on Data Mining at University of Paviacollage-dicty
Gene prioritization by compressive data fusion and chainingcopacar
Collective pairwise classification for multi-way (multi-relational) data analysismims-harvard.github.io
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