microbial-pangenomes-lab/microGWAS

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Python
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MIT License
Created almost 2 years ago
Updated 5 months ago

microbial-pangenomes-lab/microGWAS

microbial-pangenomes-lab

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Bacterial GWAS analysis

panfeed

A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

2021_ecoli_pathogenicity

Bacterial GWAS for E. coli BSI genetic determinants

Jupyter Notebook

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Estimating epistatic interactions from SARS-CoV-2 genomes

Jupyter Notebook