mfitzp/metaviz

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2
Language
Python
License
MIT License
Created over 10 years ago
Updated over 8 years ago

mfitzp/metaviz

mfitzp

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Metabolic pathway visualisation built on Graphviz

List_of_SMS_gateways

This content was previously available on WikiPedia but deleted as not really encylopaedia-worthy. Since an article of mine was originally a major source for the data in the page, I took a copy for posterity. It's now here on Github, reformatted as an editable CSV file and publicly editable by all.

pathomx

Workflow based scientific analysis built on Python

diffcast

Hands-free Programming Screencasts. Replay diffs between a series of files to generate faultless coding screencasts

max30100

A Python library for the MAX30100 HR/Oximetry sensor.

theolb

The Open Lab Book: A collection of freely distributable scientific protocols

qtipy

Automatically run IPython notebooks against new data using file triggers returning new-rendered output.

django-flowplayer

A drop in media player app for Django projects using the flowplayer flash player backend. Supports playlists, multiple player types and flowplayer configurations.

etchasnap

Etch-a-Snap the Etch-a-Sketch camera, built using a Raspberry Pi Zero & Camera

Jupyter Notebook

padua

Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)

icoshift

A versatile tool for the rapid alignment of 1D NMR spectra

biocyc

A Python interace to the BioCyc Web API

nmrbrew

Standalone 1D NMR processing application built on the Pathomx libraries

kropbot

KropBot: Multiplayer remote-controlled Raspberry Pi robot

screader

Sam Coupe Entropy Reader (as used on FRED magazine) text extractor/convertor

accuri2fcs

Accuri2svg is a command line program for the conversion of Accuri .c6 flow cytometry data files to the standard .fcs format.

graphit

Simple scientific data graphing from the command line with matplotlib

toolz

A collection of random tools in python. Mostly geared towards scientific data processing and visualization. (exported from code.google.com/p/toolz)

scrimage

SAM Coupe SCREEN$ to Image converter

iigby

Is it getting better yet?

pathminer

A simple Python biological pathway mining algorithm based on the Biocyc database

paddle

GUI-based MaxQuant proteomics processing tool built on PaDuA and Pathomx libraries

metabohunter

A Python interface to the Metabohunter 1D 1H NMR metabolite identification service

books

Source code, feedback & corrections for all of my Python programming books, including Create GUI Applications with Python & Qt

gpml2svg

A command line tool and Python API for the conversion of biological pathways marked up using GPML to SVG.

smrtr

[Archive] A historic web-based education project; no longer maintained. Developed in Django.