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This repository contains information and code about the analysis of metabolomics, lipidomics and proteomics for Knaus et al. Large neutral amino acid levels tune perinatal neuronal excitability and survival

VRNetzer

A Virtual Reality platform for interactive, immersive network exploration.

CartoGRAPHs

HTML

MultiOme

Network-based project to explore gene connectivity through biological scales

HTML

BioProfiling.jl

A flexible Julia toolkit for high-dimensional cellular profiles

Julia

Perturbome

Code to reproduce the study: Mapping the perturbome network of cellular perturbations.

Jupyter Notebook

DataDiVR_WebApp

JavaScript

cartoGRAPHs_app

A webbased visualization framework for networks.

Python

Analytics_Module

Flask-based server handling data requests from the UI Module (VRNetzer)

Python

datadivr-demo

Demo version of the DataDiVR 3-D network visualization software

Python

network_course

Jupyter Notebook

ISMB_ECCB_2023_Network_VR_Visualization

Jupyter Notebook

hci-immune-synapse

Companion repository for the article "Morphological profiling of human T and NK lymphocytes identifies actin-mediated control of the immunological synapse"

Jupyter Notebook

radipop_scripts

Scripts to train and validate random forest model for HVPG prediction

Jupyter Notebook

radipop

Predicting portal hypertension outcomes from abdominal CT scans

Jupyter Notebook

StringEx

Contains the StringEx extension for the VRNetzer backend

Python

STRING-VRNetzer

Access protein-protein association networks from STRING DB in VRNetzer

Java

menchelab/Knaus_et_al_2022

menchelab

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