• Stars
    star
    2
  • Language
    Python
  • Created about 7 years ago
  • Updated about 7 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Miscellaneous file that should probably be version controlled, but don't really need their own repositories.

More Repositories

1

snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data
Python
378
star
2

parkour

Moved to: https://github.com/maxplanck-ie/parkour2
JavaScript
33
star
3

HiCAssembler

Software to assemble contigs/scaffolds into chromosomes using Hi-C data
Python
27
star
4

parkour2

Parkour2: Laboratory Information Management System πŸ‘©πŸ»β€πŸ”¬ 🧬 πŸ‘¨πŸ½β€πŸ’»
Python
25
star
5

rna-seq-qc

Rna-seq pipeline, From FASTQ to differential expression analysis...
Python
20
star
6

10X_snakepipe

A snakemake pipeline for 10X genomics cellranger
Python
19
star
7

TheWhoTheWhatTheHuh

"The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.
Python
11
star
8

cookiecutter-bioinformatics-project

A cookiecutter template for bioinformatics projects, inspired by cookiecutter-data-science and Snakemake Workflows.
Python
7
star
9

data_repository

Makefiles and all associated scripts needed to completely remake /data/repository on all linux desktops
Makefile
4
star
10

Rintro

material for R-Course
R
4
star
11

Rseurat

Single Cell RNA-seq Course
R
3
star
12

snakequest

A shiny app that collects user input required for running snakepipes.
R
3
star
13

ultraheatmap

extra pumped heatmaps
Python
3
star
14

sc-VirusScan

A Snakemake pipeline for identifying viruses from single-cell data.
Python
2
star
15

ATACofthesnake

Differential accessibility calculation for bulk-ATAC seq.
Python
2
star
16

docker-blast

wwwblast in a docker container
Dockerfile
1
star
17

TRAP

tools and utilities for annotating DNA sequences
Perl
1
star
18

Rdeseq2

Material for the advanced R course
R
1
star
19

Genes2Functions

This is a shiny app built around clusterProfiler to perform functional enrichment analysis from RNA-Seq DE analysis
HTML
1
star
20

dissectBCL

demultiplexing pipeline
Python
1
star