Discover maxplanck-ie/Genes2Functions Open Source project

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This is a shiny app built around clusterProfiler to perform functional enrichment analysis from RNA-Seq DE analysis

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Customizable workflows based on snakemake and python for the analysis of NGS data

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parkour2

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data_repository

Makefiles and all associated scripts needed to completely remake /data/repository on all linux desktops

Makefile

Rintro

material for R-Course

Rseurat

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snakequest

A shiny app that collects user input required for running snakepipes.

ultraheatmap

extra pumped heatmaps

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sc-VirusScan

A Snakemake pipeline for identifying viruses from single-cell data.

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ATACofthesnake

Differential accessibility calculation for bulk-ATAC seq.

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Misc

Miscellaneous file that should probably be version controlled, but don't really need their own repositories.

Python

docker-blast

wwwblast in a docker container

Dockerfile

TRAP

tools and utilities for annotating DNA sequences

Perl

Rdeseq2

Material for the advanced R course

dissectBCL

demultiplexing pipeline

Python

maxplanck-ie/Genes2Functions

maxplanck-ie

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