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cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.orgcrisporWebsite
All source code of the crispor.org websitepubMunch
various tools to download, convert and process the full text of scientific articlescrisporPaper
Code for the CRISPOR article, all data and code to create figures and analysismultiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.ucscBeacon
A GA4GH Draft Beacon implementationmaxtools
Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parserspubMunch3
various tools to download, convert and process the full text of scientific articlesmaxPlot
fast javascript scatter plot libraryknowledger
A DCC-like system to submit data and metadata and keep track of submissionsacgi
Code for ACGI Ethereum democrisprAnalysis
code and data to analyze crispr offtargetsbrowserInstall
An install script for the UCSC Genome BrowserLove Open Source and this site? Check out how you can help us