maximilianh/pubMunch

Stars
52
Rank 558,925 (Top 12 %)
Language
Python
Created about 12 years ago
Updated almost 2 years ago

maximilianh/pubMunch

maximilianh

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various tools to download, convert and process the full text of scientific articles

cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

crisporWebsite

All source code of the crispor.org website

crisporPaper

Code for the CRISPOR article, all data and code to create figures and analysis

multiSub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

ucscBeacon

A GA4GH Draft Beacon implementation

maxtools

Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers

pubMunch3

various tools to download, convert and process the full text of scientific articles

maxPlot

fast javascript scatter plot library

knowledger

A DCC-like system to submit data and metadata and keep track of submissions

acgi

Code for ACGI Ethereum demo

repeatBrowser

scripts to create the repeat browser assembly hub

crisprAnalysis

code and data to analyze crispr offtargets

browserInstall

An install script for the UCSC Genome Browser