maximilianh/multiSub maximilianh/multiSub

  • Stars
    star
    35
  • Rank 748,900 (Top 15 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created over 3 years ago
  • Updated over 2 years ago
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maximilianh/multiSub
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maximilianh

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Repository Details

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

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