maxbiostat/BayesianStatisticsCourse

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maxbiostat/BayesianStatisticsCourse

maxbiostat

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PhD-level course at [EMAp](https://emap.fgv.br/en)

Statistical_Inference_BSc

Course materials for Statistical Inference ("Inferência Estatística")

stats_modelling

Resources for Statistical Modelling ("Modelagem Estatística").

Computational_Statistics

Course materials for Computational Statistics, PhD course at EMAp.

Statistical_Inference_MSc

Course materials for [Statistical Inference](https://emap.fgv.br/disciplina/inferencia-estatistica)

R0_uncertainty

Some remarks on prior modelling for the basic reproductive number in the Susceptible-Infected-Recovered (SIR) epidemic model

Jupyter Notebook

Statistical_Phylogenetics_resources

So you want to learn Statistical Phylogenetics?

A2_StatMod_2023

Aggregator for the final reports on Statistical Modelling (FGV EMAp 2023/2)

ML_phylogenetics

Collection of resources on Machine Learning for Phylogenetics

opinion_pooling

Bits and pieces on (logarithmic) opinion pooling

StanConnect2021_Biostatistics

Repository for the Biomedical Statistics edition of StanConnect2021

Jupyter Notebook

npowerPrioR

Code for sampling from an approximate normalised power posterior using Stan.

computing_applied_bayes

Some notes and resources on computing techniques for Applied Bayesian Modelling

Student_projects

A collection of open research projects

sampling_binary_covariances

Given a P-dimensional vector of marginal probabilities, sample a compatible covariance matrix uniformly

propriety_power_priors

On the propriety of the power prior for general models

BSSVS_Stan

Bayesian Stochastic Search Variable Selection with Stan using brute force marginalisation

maxbiostat

truncation_tests

Preliminary code to test truncation algorithms for infinite series and their applications in Statistics.

bplaw

Fitting power law distributions to empirical data using difference functions

Jupyter Notebook

phylogenetic_MH

Metropolis-Hastings-type sampling of phylogenetic distributions

COMP_Stan

Implementing the Conway-Maxwell Poisson distribution in Stan.

CODE

Code I have developed for my research and teaching over the years.

Jupyter Notebook

PhD_Thesis

My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018

COVID-19_prevalence_Rio

Code and data to estimate prevalence from the EPICOVID serological survey

CV

My curriculum vit\ae.

ESS_HPDs

Investigating accurate estimation of HPDs

StanCon2020

My (proposed) contribution to StanCon2020

FMDV_AMERICA

Tracking the spread of Foot-and-Mouth Disease virus in South America

Jupyter Notebook

papers

PDFs of my articles, published, in press and unpublished. Preprints are available for the later two.

presentations

Presentations I have given

PhylogeographeR

CTMC-based phylogeography simulator