There are no reviews yet. Be the first to send feedback to the community and the maintainers!
gctree
GCtree: phylogenetic inference of genotype-collapsed treessumrep
Summary statistics for repertoiresvampire
π§ Deep generative models for TCR sequences π§olmsted
B-cell repertoire and clonal family tree explorerphippery
gapml
phip-flow
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasetsrelay
Bare-bones continuous integration using Docker Hub and Slack.hyperfreq
Bayesian tool for APOBEC hypermutation analysispt
Phylogenetic topographer.linearham
A Bayesian Phylo-HMM for B cell receptor sequence analysissmctc
Our fork of Adam M. Johansen's Sequential Monte Carlo Template Classbetarat
Bayesian analysis of contingency tables as the ratio of two binomially distributed random variablesvampire-analysis-1
Data analysis using the vampire models for immune cell receptor distributionstangle
Code for working with tanglegrams.ig-sw
Smith-Waterman alignment for immunoglobulinsbcr-phylo-benchmark
larch
Inference and manipulation of history DAGsalnclst
A simple UCLUST-like clustering algorithm for pre-aligned sequences with built in recenteringtransport
curvature
Ricci-Ollivier curvature of SPR and related graphs.ecgtheow
Ancestral lineage reconstruction using BEAST or RevBayessamm
Survival analysis of mutation motifssci-space-v2
phage-dms-nhp-analysis
repo for the NHP Phage DMS manuscript analysistorchdms
Analyze deep mutational scanning data with PyTorchtorchfun
Learning PyTorchpan-CoV-manuscript
This repository will contain all source code, data, and other files relevant to the pan-CoV phip-seq paper.vdjProjectComparison
Repo contains projects and script to compare projectsgoliketree
Phylogenetic likelihoods in Go via BEAGLE, just to try out the languagelibptpll
tex-template
gp-benchmark-1
gricci
SAGE implementation of Ricci-Ollivier curvature on graphs.bioboxmixcr
A biobox (http://bioboxes.org/) for Mixcr (https://github.com/milaboratory/mixcr)sumrep-ms
Manuscript describing summary statistics for repertoiresconda-beagle
For a Docker image containing conda and the BEAGLE phylogenetic likelihood librarybioboxpartis
This repository contains the partis project (https://github.com/psathyrella/partis) packaged into a biobox (http://bioboxes.org/).multidms
Joint modeling of multiple deep mutational scanning experimentsLove Open Source and this site? Check out how you can help us