matsen/constnj

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2
Language
OCaml
Created about 15 years ago
Updated over 12 years ago

matsen/constnj

matsen

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Code to accompany "constNJ: an Algorithm to Reconstruct Sets of Phylogenetic Trees Satisfying Pairwise Topological Constraints"

pplacer

Phylogenetic placement and downstream analysis

chefinator

Expedition menu planning

teaching

My teaching materials.

ubiquity_synonymity

Code to accompany the paper "Ubiquity of synonymity: almost all large binary trees are not uniquely identified by their spectra or their immanantal polynomials"

sbreview

Systematic biology review article on phylogenetics and the human microbiome; associated with LIRMM conference

roguebme

Code to accompany "Polyhedral Geometry of Phylogenetic Rogue Taxa"

all-hail-sage

A few useful function definitions for http://sagemath.org/.

research

My research statement.