marcom/LinearFold.jl

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Created almost 2 years ago
Updated 4 months ago

marcom/LinearFold.jl

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Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold

Llama.jl

Julia interface to llama.cpp, a C/C++ library for running language models

ViennaRNA.jl

Julia interface to ViennaRNA for RNA structure prediction and analysis

RNAstructure.jl

Julia interface to the RNAstructure program suite for RNA structure prediction and analysis

BioStockholm.jl

Julia parser for the Stockholm file format (.sto) used for multiple sequence alignments (Pfam, Rfam, etc)

PlotRNA.jl

Plot nucleic acid secondary structures with Julia

FoldRNA.jl

Nucleic acid secondary structure prediction and analysis

dss-opt

Dynamics in sequence space optimisation for RNA sequence design

DiffFoldRNA.jl

Differentiable RNA partition function and sequence design