Discover mar-esther23/boolnet-perturb-0.1 Open Source project

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mar-esther23

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Robustness and Plasticity in Regulatory Networks. The BoolNetPerturb package adds functions to BoolNet for perturbing Boolean Regulatory Networks. This functions can be used for the study of biological systems. This package is capable of labeling states, simulating multiple knock-outs and over-expressions and simulating fixed and transient perturbations in the states and trajectory of a network. See the Jupyter Tutorials for more examples.

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rgriffin

The rGriffin package is an R connector to Griffin. Gene Regulatory Interaction Formulator For Inquiring Networks (griffin) is a java library for inference and analysis of Boolean Network models. Griffin takes as inputs biologically meaningful constraints and turns them into a symbolic representation. Using a SAT engine, griffin explores the Boolean Network search space, finding all satisfying assignments that are compatible with the specified constraints. The rgriffin package includes a number of functions to interact with the BoolNet package. See the Jupyter Tutorials for more examples.