mahmoodlab/TriPath mahmoodlab/TriPath

  • Stars
    star
    80
  • Rank 404,329 (Top 8 %)
  • Language
    Python
  • License
    Other
  • Created over 1 year ago
  • Updated 6 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
mahmoodlab/TriPath
github

mahmoodlab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Analysis of 3D pathology samples using weakly supervised AI - Cell

More Repositories

1

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Python
1,039
star
2

HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
Jupyter Notebook
497
star
3

PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI
Jupyter Notebook
269
star
4

UNI

Towards a general-purpose foundation model for computational pathology - Nature Medicine
Jupyter Notebook
251
star
5

CONCH

A vision-language foundation model for computational pathology - Nature Medicine
Python
225
star
6

NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation
Python
183
star
7

PORPOISE

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Jupyter Notebook
179
star
8

TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature
Python
170
star
9

MCAT

Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
Jupyter Notebook
149
star
10

HEST

HEST: Bringing Spatial Transcriptomics and Histopathology together
Python
123
star
11

Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Python
114
star
12

SurvPath

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
Python
96
star
13

SISH

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Python
95
star
14

MI-Zero

Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Python
87
star
15

TANGLE

Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
Python
70
star
16

PANTHER

Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Jupyter Notebook
57
star
17

MAPS

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
Jupyter Notebook
46
star
18

HistoFL

Federated Learning for Computational Pathology - Medical Image Analysis
Python
44
star
19

CRANE

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
Python
28
star
20

MMP

Multimodal prototyping for cancer survival prediction - ICML 2024
Jupyter Notebook
27
star
21

MADELEINE

MADELEINE: multi-stain slide representation learning (ECCV'24)
Python
25
star
22

varpool

Variance pooling to incorporate ITH in CPath models - MICCAI 2022
Python
22
star
23

multimodal-cancer-origin-prediction

Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction
Python
15
star
24

CPATH_demographics

Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
Python
12
star
25

MANTA

Multimodal AI for Renal Allograft Biopsy Assessment
Python
4
star
26

hest-website

Jekyll website for HEST-1k
CSS
2
star
27

EmbeddedAI-Scope

A 3D Printed Embedded AI-based Microscope for Pathology Diagnosis
Jupyter Notebook
1
star
28

MAXIM

MArker imputation model for multiple\underlineX IMages
Jupyter Notebook
1
star