magnusdv/pedtools

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Language
R
License
GNU General Publi...
Created over 6 years ago
Updated 3 months ago

magnusdv/pedtools

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Tools for working with pedigrees in R

quickped

An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPed also computes a variety of relatedness coefficients and offers verbal descriptions of pairwise relationships.

filtus

VCFped

forrel

Forensic pedigree analysis and relatedness inference

pedsuite

R packages for pedigree analysis

ribd

Computation of pedigree-based relatedness coefficients. Part of the ped suite packages for pedigree analysis in R

ibdsim2

Simulate patterns of DNA sharing between pedigree members

pedprobr

Pedigree probabilities in R

pedsuiteMonitor

A shiny app to monitor development of the pedsuite packages.

pedlikCompare

Compare pedigree likelihoods calculated by different programs

segregatr

Segregation analysis for clinical variant interpretation

paramlink2

Parametric Linkage Analysis

pedFamilias

Import and Export 'Familias' Files

pedbuildr

Pedigree Reconstruction in R

pedmut

Mutation models for pedigree likelihood computations

dvir

Disaster Victim Identification in R

verbalisr

Describe Pedigree Relationships In Words

ibdClassifier

KLINK

Kinship Analysis with Linked Markers

pedinr

Datasets for the book "Pedigree Analysis in R"

ibdsim2-legacy

A legacy version of the ibdsim2 app for simulating and visualising genetic sharing between pedigree members.