lukassnoek/python4mri

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Created about 5 years ago
Updated about 5 years ago

lukassnoek/python4mri

lukassnoek

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Introduction to Python for neuroimaging (MRI) analysis

VoxelViz

Visualization tool for fMRI data-sets using Plotly Dash

NI-edu

Student version of NI-edu courses

Jupyter Notebook

ICON2017

Repository for the ICON 2017 hackathon 'multivoxel pattern analysis (MVPA) of fMRI data in Python'

Jupyter Notebook

introPy

Materials for a 2 week Python course taught at the Research Master Psychology (University of Amsterdam)

Jupyter Notebook

skbold

Utilities and tools for machine learning on BOLD-fMRI data

MVCA

Code for simulations and empirical analyses for the article "How to control for confounds in decoding analyses of neuroimaging data"

Jupyter Notebook

nifti2gif

Simple script to transform 3D nifti files to fancy gifs

pybest

PYthon package for Beta ESTimation (of single-trial fMRI data)

Jupyter Notebook

nilearn-tutorial

Beginner Nilearn tutorial

Jupyter Notebook

scanphyslog2bids

Code to convert Philips physiology files ("SCANPHYSLOG") to the BIDS-format, including (estimated) volume triggers.

random_notebooks

Notebooks with all kinds of things I wanted to figure out (here for archiving purposes/may be of use to others?)

Jupyter Notebook

nilearn-stats-tutorial

Tutorial about the nistats package for fMRI analysis

Jupyter Notebook

docker-and-binder-workshop

Repository for the Docker+binder workshop given at OpenMR-Benelux 2020

MSc_thesis

University of Amsterdam, research master psychology thesis

Jupyter Notebook

thesis

Repository of source files of my PhD thesis

noiseceiling

Noise ceiling estimation for machine learning models

tf-incremental-pca

A Tensorflow (2.0) implementation of incremental PCA