Discover luispedro/Coelho2009_ISBI_NuclearSegmentation Open Source

Computer Vision in Python

2,109

mahotas

MILK: Machine Learning Toolkit

811

milk

Parallel programming with Python

610

jug

Diskbased (persistent) hashtable

397

diskhash

143

django-gitcms

A git based cms for django

Read images to numpy arrays

imread

NIX + YAML for easy to use reproducible environments

nixml

Python Morphology Toolbox

pymorph

Introduction to Python (Jupyter based)

talk-python-intro

Reimplementation of TeX in Haskell: pre-alpha

hex

Python image tutorial (based on ipython notebooks)

python-image-tutorial

Machine Learning Toolkit Datasets: A collection of UCI datasets with a Python interface

milksets

Source Material for a course on Programming targeted at scientists

Programming-for-Scientists

django-gitcms files for http://pythonvision.org

pythonvision_org

CSS

mergedirs

Merge two directories without losing files

jekyll files for luispedro.org

luispedro_org

JavaScript

Coelho2021_GMGCv1

Libertarian Welfare State: A Book I'm Writing

libertarian-welfare

dot-link

Dotted Suffix Trees

My Version of Hal Daumé's Hierarchical Bayesian Compiler

HBC

pyslic

PySLIC

Mount an android device using FUSE

android-fuse

irstlm

Fork of IRSTLM

Haskell Library for safe (atomic) IO

safeio

PenalizedRegression

vita

gitpointer

elgreco

mahotas-paper

base-user

dot files and the like so that I can set up a new computer with a couple of command line calls

Read images in Python using ImageMagick++ : SUPERCEDED BY IMREAD

readmagick

Reproducible code archive for "Automatic Determination of NET (Neutrophil Extracellular Traps) Coverage in Fluorescent Microscopy Images" by Coelho et al.

Coelho2015_NetsDetermination

Talk on Scientific Oral Communication

website.content

Content for My Website

talk-scientific-communication

HTML

safeout

Simple atomic writing for Python

conduit-algorithms

Conduit based algorithms

Unpack zip/7z/tar.* archives with a consistent interface

unpack

Image Collection Management

imcol

Programming: An Introduction. A introductory book on computer programming.

programming

waldo

Waldo Project

Plot number of chars, words, and lines across time in a repository

gitwc

beiraproject

Beira Project Stuff

Shell

jug-presentations

presentations about jug

Utilities for numerics in Haskell

Hanu

A future paper about jug (written in the open)

jug-paper

Generic sorting of large datasets (using temporary files as temporary space)

fna2faa.rs

Rust

outsort

imm-mirna

Shell

particles

StructureFunctionOceanTutorial

ML-for-microbial-communities

refsweb

Web interface to refs

rbit

rabbit mail

tutorial-unit-testing

HTML

alist

Append List in Haskell

Bibtex Reference Management Software

whim

What Have I Missed

CoffeeScript

refs

Vision and Image Processing Library for Python [superceded by mahotas—use that]

vision

django-gitcms repo for beiraproject.org

tutorial-cluster-usage

mlsegment

rabbit_blog

beiraproject_org

TestingNGLESS

Next Generation Sequence Handling in Haskell

NGH

redundant100

Image diff for git on the command line

image-difftool

Haskell instances of Data.Binary

binary-instances

anscombe

fautils

Lightweight command line unit testing tool for nodejs (with coffescript support)

fragile

JavaScript

metarabbit

Posts for metarabbit.wordpress.com