lmmx/watir-paper-scanner

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Ruby
Created about 11 years ago
Updated about 11 years ago

lmmx/watir-paper-scanner

lmmx

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Web scraper to pull metadata (specifically corresponding author) from pages where unavailable through Pubmed's eUtils XML file. Work in progress 2013 / abandoned in 2014 for more useful projects.

gdocs2md-html

Convert a Google Drive Document to a markdown.

deforum-stable-diffusion

Refactor of the Deforum Stable Diffusion notebook (featuring video_init) https://colab.research.google.com/github/deforum/stable-diffusion/blob/main/Deforum_Stable_Diffusion.ipynb

page-dewarp

Document image dewarping library using a cubic sheet model

devnotes

obscure technical resolutions re: errors, installation quirks, custom setups etc.

tabsave

Super simple Chrome extension to save all files in open tabs (e.g. PDFs)

crawley-r-statistics-book-notes

Notes on Michael Crawley's "Introduction to Statistics using R" book (Wiley, 2nd edition)

range-streams

Streaming range requests in Python

copermut

Web project on information theory, graph patterns, permutations, and recombinations

beeb

A modern interface to the BBC Sounds radio catalogue

OpenResearchGlossary

Website for the Open Research Glossary (currently at http://www.righttoresearch.org/resources/OpenResearchGlossary/index.shtml)

ensembl-assembly-exceptions

Tabulated mappings of Homo sapiens and Mus musculus genome "assembly exceptions" to their location in core Ensembl database releases

ProNTo

ProNTo: Proteomics eNzymology Toolkit

scholaRdaemon

'Bot' R code to parse Google Scholar Alerts emails and send individual papers to Twitter

pydanttention

Transformer model attention in Pydantic 🤖

tubeulator

TfL open data interface library

sphinx-sub

Automatic video subtitle generation

refactory

Refactor utility with patterns composed of validated AST rules

waterdown

Detecting, reconstructing, and masking image watermarks with numpy

talk-transcripts

Transcripts of scientific talks

ordered-powerset

Code to list a powerset in an order that minimises distance between subset elements

feedly-opml

Storing my Feedly OPML and a tabular listing

hiv-phylo-analysis

Phylogenetic analysis of HIV-1 mutation patient sequencing data

tomasetti-vogelstein-2015

flappy-max

First Go app with `gomobile`! 🏃

validate-call-safe

Safe, non-error-raising, alternative to Pydantic validate_call decorator

bisque

Web scraping into structured Pydantic data models 🍲

desktops

Linux desktop files, to add applications to start menu

patito-playground

netwalk

Solver for netwalk, reading in image files of game state [under development]

metaphorism

“metaphorism, metaphor-er, metaphorest...” ❦ word games and encoded thought experiments

to-look-into

Links etc. to look into, will probably rename repo, see wiki

searchSpeakerDeck

Search Speaker Deck for talks, sort by date (in absence of a site-wide API)

CropScience

JS to add a "Crop and Print" option to the Acrobat File menu for various bioscience journals.

trumpworld

igraph analysis of Donald Trump's business world

embed-n.js

Fun little Javascript program to view PDFs "n-up" in the browser

kpath

Carl Kingsford and Rob Patro. Reference-based compression of short-read sequences using path encoding. Under review (2014). v-0.6.3

pisadl

PDBe PISA download scripts

emoji-liif

Emoji upsampling workflow using LIIF

wotd

Analysis of WOTD data from Tweets marked #WordOfTheDay from my Twitter account

plage

Paved path refactor engine

d3-step-functions

AWS Step Function visualisation in D3.js

dex

iclr2023-proc

ICLR 2023 conference proc(eedings|essing)

Jupyter Notebook

uk-covid-cases-la

Plot of COVID case rates by local authority

self-serve-py-pkg

Self-service Python package template repo

rehome

Rehome your Python scripts into nice interconnected modules

pdf2uplambda

An AWS Lambda function for pdf2up

d3-wiring-diagrams

Wiring diagram operad visualisation in D3.js

self-serve-demo

Python package auto-generated via the "lmmx/self-serve-py-pkg" GitHub template repo, with GitLab CI mirroring. Uses the cookiecutter template at lmmx/py-pkg-cc-template

dotfiles_portable

roundel

Modeling journey time on the London tube network using graph representation learning

pdf2up

A small command line utility to generate views of PDFs

importopoi

Visualising module connections within a Python package

Micro2metadata

Populating a simple library of scholarly article titles and their RSS feed URLs with bibliographic data, by giving it a structured schema in Javascript.

tfl-api-dataclass-gen

Generate dataclass modules from the TfL API’s Swagger schema

dex-deprecated

Digitising and cross-referencing mathematics textbook index pages

qck

Rubber ducking code with language models

covid19_seir_model

Model of COVID-19 transmission from Sir Roy Anderson's 2020 publication in The Lancet

py-pkg-cc-template

ONS-taser-stats-vis

Data analysis and visualisation using Home Office / Office for National Statistics datasets on police workforce size, population size, and taser use for 43 UK law enforcement territorial regions

england-covid-cases-and-admissions

Plots of COVID case rates and hospital admissions for England

waveform

Waveform package that accompanied Amariei et al. (2014) doi: 10.3389/fcell.2014.00040

wwdc-21-3d-obj-capture

"TakingPicturesFor3DObjectCapture" sample code from WWDC21 (cloned from artemnovichkov/wwdc21-samplecode)

pyx-sys

A library for storage and restore of system state in terms of windows and workspaces

csv-validation-sandbox

Sandbox to work out and demonstrate a workflow for validation of CSVs which may have multiline fields, to be contributed to fsspec-reference-maker and ultimately to dask.

tap

dex ⠶ tap – an audio transcriber for web radio

importstring_demo

Demo of deptry inability to detect Pydantic ImportString import

emptypt

Template/benchmark for an entrypoint CLI using msgspec or Pydantic

mvdef

Move function definitions from one file to another, moving or copying associated import statements along with them

tsutil

Tree-sitter syntax tree printer util

docs-pkg

Minimal mkdocs template

uv-ws-demo

A simple demo of the new workspaces feature in uv 0.3.0