leschzinerlab/FreeHand

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Language
Python
License
MIT License
Created almost 11 years ago
Updated over 10 years ago

leschzinerlab/FreeHand

leschzinerlab

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Scripts for implementing the free-hand test on electron microscopy single particles

Relion

Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)

Motion-correction

Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories

Multislice

Scripts for calculating simulated transmission electron microscopy images based upon PDB files

EMAN2

Scripts for electron microscopy image analysis using EMAN2/Sparx

SPIDER

Scripts for using SPIDER to analyze images of single particles from electron microscopy images

FREALIGN

Scripts for using FREALIGN for structure refinement

XMIPP

Scripts for electron microscopy image analysis using XMIPP

Tiltpicker_import_patched

Scripts to run a patched version of TiltPicker-2.0b13 that allows importing of particle picks

Phase_randomisation

Scripts for randomizing the phases of electron microscopy images based on Chen et al. Ultramicroscopy

FindDQE

Scripts to run 'finddqe.exe' from Ruskin et al. Journal of Structural Biology 2013

Appion

Useful scripts for interacting with Appion

EMAN2recon

Scripts for running EMAN2/Sparx refinement written by Pawel Penczek