leiferlab/liu-temporal-processing

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leiferlab/liu-temporal-processing

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Source code associated with Liu et al "Temporal processing and context dependency in C. elegans response to mechanosensation"

savitzkygolay

Savitzky-Golay filters

NeRVEclustering

Code accompanying Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM (2017) Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol 13(5): e1005517.

liu-closed-loop-code

worm-functional-connectivity

pumpprobe

Signal propagation atlas libraries, Randi et al. 2022

WholeBrainImagingSuite

Collection of software components used in Nguyen et al 2015

CenterlineTracking

wormbrain

Handling of small brains

testPoisson

Matlab implementation of E-test for comparing poisson means. Based on Krishnamoorthy, K and Thomson, J. (2004)

pump-probe-acquisition

Francesco's LabView code for pump-probe experiments. www.github.com/leiferlab/pump-probe-acquisition#francescos-labview-code README at the bottom of the long list of files, which are actually well organized in the LabView project pump-probe.lvproj

matlab-base-utils

Library of useful Matlab Utilities

internal.mindcontrolAPI

Interprocess C API / DLL for getting data in and out of the mindcontrol application in realtime.

wormdatamodel

Data model for whole brain recordings

leiferlab.princeton.edu