legumeinfo/ConektLegumes

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legumeinfo/ConektLegumes

legumeinfo

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Integrate CoNekT (Coexpression Network Toolkit) with legumes expression data into LIS.

gcv

Federating genomes with love (and synteny derived from functional annotations)

web-components

A collection of Web Components for interacting with and visualizing biological data.

jekyll-legumeinfo

legumeinfo.org built with Jekyll and served on GitHub Pages

microservices

A collection of microservices developed and maintained by the Legume Information System

graphql-server

A GraphQL server that supports the Legume Information System and related biodata websites

mine-issues

Report ALL issues on LIS mines here! Regardless of which mine you found it on!

Funnotate

Functional annotation of FASTA sequences

gcv-docker-compose

Resources for running the Genome Context Viewer with Docker Compose

datastore-specifications

Specifications for directory naming, file naming, file contents in the LIS datastore

mine-java

Common repo for webapps/src code shared amongst all LegFed mines

jekyll-starter-legumeinfo

A Jekyll site that demonstrates how to use the legumeinfo Jekyll theme

jekyll-theme-legumeinfo

A Jekyll theme for the Legume Information System and related biodata websites

taxon-symbology

Javascript library for consistent coloring of visualizations by genus & species.

brilliant_gallery

Fork of Drupal Brilliant Gallery module

AHRD-not-HARD

a bit of wrapper for running the AHRD analysis in "standalone" mode (ie not via the web interface)

click_loguru

Simple loguru logging to file and stderr for your click application

website-ui-specs

User interface specification of components built for the Jekyll sites.

lis-expression-heatmap

A bluegenes expression heatmap tool for lists

tripal_phylotree

LIS project- tripal module for chado phylogeny and gene families

scripts-qtlloader

Scripts for loading QTL data

datastore-issues

mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance

pandagma

Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.

pytest-datadir-mgr

Pathlib-based downloads, caching of generated files, and a context for temp directories