leahkemp/RezBaz2020_snakemake_workshop

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Created about 4 years ago
Updated about 3 years ago

leahkemp/RezBaz2020_snakemake_workshop

leahkemp

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Snakemake workshop for RezBaz2020.

current_pipelines

A review of the current pipelines/tools available for analysing DNA/RNA data.

documentation

Documentation for various ESR projects.

ont_human_workflow

A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.

talks_etc

A place for talks, blurbs, bios etc related to work at ESR.

tasty_script_nibs

A collection of tasty script nibs I like and don't want to loose

ESR_human_genomics

An initial place to collate projects associated with the Human Genomics group at ESR

running_16S_rRNA_pipeline

Trying to help a colleague get a 16s-rRNA-Sanger snakemake pipeline working.

training_plotting

Plotting my training data because I'm a nerd and a jock.

test_SV_callers

Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).

nesi_A100s_parabricks_benchmarking

Benchmarking parabricks on NVIDIA A100's on NeSi.

smncrna_analysis_template

Small non-coding RNA analysis template for analysing Illumina small RNAseq data.