lbcb-sci/herro lbcb-sci/herro

  • Stars
    star
    187
  • Rank 206,415 (Top 5 %)
  • Language
    Rust
  • License
    Other
  • Created almost 2 years ago
  • Updated 28 days ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
lbcb-sci/herro
github

lbcb-sci

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

More Repositories

1

raven

De novo genome assembler for long uncorrected reads
C++
201
star
2

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
C++
199
star
3

RiNALMo

RiboNucleic Acid (RNA) Language Model
Python
59
star
4

GNNome

A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
Python
24
star
5

rockfish

Python
9
star
6

roko

A deep learning consensus polisher
Python
7
star
7

I002C

Telomere-to-Telomere diploid Indian Genome
7
star
8

MetagenomicsBenchmark

Python
6
star
9

ram

C++
6
star
10

ratlesnake

C++
3
star
11

GNNs-Hamiltonian-cycles

Supplementary code for "Finding Hamiltonian cycles with graph neural networks"
Python
2
star
12

Rockfish-old

Deep learning based method for detecting DNA base modifications
Python
2
star