laserson/pytools laserson/pytools

  • Stars
    star
    20
  • Rank 1,121,974 (Top 23 %)
  • Language
    Python
  • License
    Apache License 2.0
  • Created over 14 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
laserson/pytools
github

laserson

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

some general useful python tools for genomics

More Repositories

1

squarify

Pure Python implementation of the squarify treemap layout algorithm
Python
270
star
2

dsq

Distributed Streaming Quantiles (for PySpark)
Python
37
star
3

avro2parquet

Hadoop MapReduce tool to convert Avro data files to Parquet format.
Java
34
star
4

impyla-old

OLD - impyla now developed at `cloudera/impyla`
Python
22
star
5

ftptree

Crawl an FTP site and visualize file size-weighted directory tree
Python
21
star
6

impala-udf-devel

Impala SDK for UDF development
C
11
star
7

rock-health-python

Code for Rock Health Python-for-Hadoop overview
Python
7
star
8

pyprotovis

python port of protovis visualization library
Python
5
star
9

pympala

Python client to Cloudera Impala
Python
4
star
10

hadoop-genomics-demo

Demo of using Hadoop ecosystem (including Impala) on genome variant data
Python
2
star
11

stitcher

quality-aware stitching of overlapping mate-paired reads
1
star
12

kiwi

Hadoop-based immune sequencing tools based on bdg-formats
1
star
13

ClientForm

ClientForm python module by John J. Lee
Python
1
star
14

quince

Scalable genomics variant store and analytics
Java
1
star
15

www

www
JavaScript
1
star
16

epitopes

tools for epitope mapping
Python
1
star
17

literature

my bibliography
1
star