laderast/bash_bioinfo_scripts

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Created almost 2 years ago
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laderast/bash_bioinfo_scripts

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Scripts for Bash for Bioinformatics course

decampr

Converts DataCamp repos to Ines Montani's course format

tidyowl

LearnR repository for intermediate tidyverse lessons (drawing the f**king owl)

gradual_shiny

Workshop introducing Shiny programming concepts

RBootcamp

New version of the RBootcamp using Ines Montani's format

data_storytelling_bdc

Data Storytelling Workshop for BioData Club

portfolio-example

Simple portfolio example derived from the forty theme

burro

Exploring data together using shiny (burro(w) into the data)

cvdRiskData

R package for Cardiovascular Risk Dataset and Data generation script

magic-of-markdown

Short tutorial on using Markdown for Documents, GitHub Pages and Reproducible Scripting

ready_for_r_site

Ready for R Site

bash_for_bioinformatics

Beginning of a textbook for shell skills for bioinformatics

flowDashboard

Shiny Modules for visualizing flow cytometry data

AnalyticsCourse

Prework and In Course Assignments for Analytics Course

shinyEDA

Workshop on exploratory data analysis (EDA) using a shiny Dashboard

oop_talk

Object Oriented Systems in R Talk

DSIExplore

Exploratory data analysis and statistics with LearnR for OHSU Data Science Institute

clinical_data_wrangling

Workshop Materials for Clinical Data Wrangling of Sleep Heart Health Study dataset

dataLiteracyTutorial

Data Literacy LearnR tutorial for HSMP410

qmd_rmd

Short Talk about Quarto versus RMarkdown

laderast.github.io

exacloud_tutorial

Updated tutorial on using exacloud and slurm. Start here: https://laderast.github.io/exacloud_tutorial

cvdNight1

BD2K Workshop for exploring predictive variables in Cardiovascular Risk

nhanes_explore

Shiny App for Exploring the NHANES dataset

BMI535slides

Slides for BMI 535/635 Processing of Large Scale Data

Jupyter Notebook

shiny_module_tutorial

Demonstration of shiny modules in action

rmed_2020_talk

Talk for R/Medicine 2020

best_practices_dnanexus

Book describing best practices on the DNAnexus Platform

Jupyter Notebook

xvhelper

An R package to help decode Apollo datasets

Jupyter Notebook

intro_to_arrow

Introduction to the R Arrow Package

flipbook_test

whyIScience

Project to show why scientists do science

r-bootcamp

Draft Tutorial for self directed bootcamp for learning R-programming basics.

intro_apis_json_cascadia

learning_sparklyr

Notebooks for Working with Spark/sparklyr on DNAnexus

intro_apis_json

introduction_to_json

Introduction to JSON for DNAnexus Users

igraphTutorial

Simple Tutorial for Igraph Package

qprc_short_course_2021

Notebooks for the Quality and Productivity Research Conference 2021 short course

webr-demo

Demo talk about WebR for PDX-R

md_phd_data_sci

MD/PhD Data Science Workshop

cv

CSE631Shiny

Shiny Tutorial for CSE631 Class

DreamEDAShiny

Workshop for EDA of DREAM Challenge Data

clusteringLecture

Interactive Slides for Explaining Aspects of Clustering Algorithms

ggplot2-intro

Slides for an introductory lecture on ggplot2

data_storytelling_talk

Data Storytelling talk for Analytics Course BMI 569

learntidyselect

LearnR Tutorial about tidyselect & doing things with multiple columns

cvdNight2

BD2K CVD workshop night 2

shiny_stuff

Templates and Tips for Shiny Things that I will probably forget

exacloudTutorial

shinyowl

Intermediate Shiny Workshop