lacerbi/compstats-files lacerbi/compstats-files

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lacerbi/compstats-files
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Repository Details

Repository of utility files for the Computational Statistics course.

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optimviz

Visualize optimization algorithms in MATLAB.
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Tutorials on statistical model fitting (optimization, Bayesian inference) for Day 2 of BAMB! 2022.
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workshop-nyu-2019

Introductory workshop to modeling and model fitting in cognitive and computational neuroscience
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vbgmm

Variational Gaussian mixture model for MATLAB.
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workshop-bristol-2019

Introductory workshop to modeling and model fitting in psychophysics and neuroscience
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psybayes

Bayesian adaptive stimulus placement of psychometric function for MATLAB.
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visvest-causinf

Bayesian comparison of causal inference strategies in multisensory heading perception
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infbench

Benchmark of posterior and model inference algorithms for (moderately) expensive likelihoods.
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bads

Bayesian Adaptive Direct Search (BADS) optimization algorithm for model fitting in MATLAB (old location)
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ChangeProb

Human Online Adaptation to Changes in Prior Probability
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lautils-mat

Luigi Acerbi's utility functions for MATLAB.
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12

neurobench

Benchmark of derivative-free optimization algorithms applied to models in cognitive and neural science.
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eissample

Ensemble (inversion) slice sampling: a robust, self-tuning MCMC method for posterior inference.
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14

tics-2020-tutorial

Tutorial on computational modeling and statistical model fitting part of the *Trends in Computational Neuroscience* graduate course of the University of Geneva (2020).
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mexxer

Template/interface generator for C code from MATLAB functions.
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16

gmm1

1-D Gaussian mixture model toolbox for MATLAB.
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multiESS

Multivariate effective sample size (mESS) of Markov chain in MATLAB.
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18

padova2022-bayes

Tutorial on Bayesian model fitting with PyVBMC.
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19

marglike

Computation of the marginal likelihood from MCMC output
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gofit

Compute absolute goodness of fit via entropy estimation
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21

nyu2023-bayes

Tutorial on Bayesian model fitting with (Py)VBMC.
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22

ModelWork

MATLAB suite for model building and model fitting.
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23

vbmc

Variational Bayesian Monte Carlo (VBMC) algorithm for posterior and model inference in MATLAB (old location)
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24

ibl-2020-tutorial

Tutorial on computational modeling and statistical model fitting part of the IBL Computational Neuroscience course (2020).
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25

gplite

Lite Gaussian process regression toolbox
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26

cosmo-2017-tutorial

Tutorial on optimization and model fitting held at the CoSMo 2017 summer school.
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27

intro-modeling-psych-2018

Materials for an intro workshop to modeling and model fitting in psychophysics and neuroscience
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28

bayescausinf-models

Models of visuo-vestibular Bayesian causal inference
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29

cosmo-2018-tutorial

Tutorial on optimization and model fitting held at the CoSMo 2018 summer school.
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