labstructbioinf/DeepCoil

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21
Rank 1,084,038 (Top 22 %)
Language
Python
Created over 6 years ago
Updated 12 months ago

labstructbioinf/DeepCoil

labstructbioinf

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Fast and accurate prediction of coiled coil domains in protein sequences.

pLM-BLAST

Detection of remote homology by comparison of protein language model representations

localpdb

Python package to manage protein structures and their annotations

EdgeGat

graph neural network layer for Deep Graph Library with pytorch backend

rossmann-toolbox

Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins

PiPred

Deep learning based prediction of pi-helices in protein sequences

lbs-tools

Jupyter Notebook

graph_toolbox

utilities for processing protein structures

Jupyter Notebook

DeepCoil_Paper_2018

Scripts and jupyter notebooks necessary to replicate the analyses presented in the DeepCoil paper 2018.

Jupyter Notebook

samcc_turbo

Software for automatic detection and measurement of coiled coils in PDB structures.

HAMPpred

Assessing the conformational landscape of the HAMP domain with AlphaFold2

Jupyter Notebook

edi

MDDesign

Set of scripts that facilitate molecular dynamics aided screening of the models generated with Rosetta and selection of the structural ensembles that can be used as input in protein design simulations.

dc2_oligo

Prediction of oligomeric state of coiled-coil domains