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snpless-nf
snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.bio-scripts
collection of scripts for bioinformatic analysiskakscalculator2
Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2orthomap
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.MSA2dist
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysisoggmap
oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ages per orthologous group) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.scTEI
add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objectsCRBHits
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.literal-dists
Convert a FASTA alignment with ambiguous nucleotides to literal distance matrixdagchainer
Fork of the DAGchainer project https://sourceforge.net/projects/dagchainert2gGTF
extract transcript to gene table for DEGLove Open Source and this site? Check out how you can help us